Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Theseus
Upstream-Contact: Douglas Theobald <dtheobald@brandeis.edu>
Source: http://www.theseus3d.org/index.html

Files: *
Copyright: © 2003-2015, Douglas L. Theobald
License: GPL-3+

Files: libdltmath/ncbi_math.*
Copyright: © 1991, Gish, Kans, Ostell and Schuler
License: GPL-2+

Files: libdltmath/myrandom.c
Copyright: © 2002, Takuji Nishimura and Makoto Matsumoto
License: GPL-2+

Files: qcprot.*
Copyright: 2009-2015 Douglas L. Theobald <dtheobald@brandeis.edu>, Department of Biochemistry
                     Pu Liu <pliu24@its.jnj.com>, Johnson & Johnson Pharmaceutical Research and Development, L.L.C.
License: BSD-3-clause
  Redistribution and use in source and binary forms, with or without modification, are permitted
  provided that the following conditions are met:
 .
  * Redistributions of source code must retain the above copyright notice, this list of
    conditions and the following disclaimer.
  * Redistributions in binary form must reproduce the above copyright notice, this list
    of conditions and the following disclaimer in the documentation and/or other materials
    provided with the distribution.
  * Neither the name of the <ORGANIZATION> nor the names of its contributors may be used to
    endorse or promote products derived from this software without specific prior written
    permission.
 .
  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
  PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
  HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: examples/*
Copyright: PD
License: PD
 ADVISORY NOTICE FOR USE OF THE PDB ARCHIVE
 .
 By using the materials available in this archive, the user agrees to abide
 by the following conditions:
 .
 * The archival data files in the PDB archive are made freely available
 to all users. Data files within the archive may be redistributed in original
 form without restriction. Redistribution of modified data files using the same
 file name as is on the FTP server is prohibited. The rules for file names are
 detailed at http://www.wwpdb.org/wwpdb_charter.html.
 .
 * Data files containing PDB content may incorporate the PDB 4-letter entry
 name (e.g. 1ABC) in standard PDB records only if they are exactly the same
 as what is residing in the PDB archive. This does not prevent databases
 from including PDB entry_id's as cross-references where it is clear that
 they refer to the PDB archive. PDB records refer to the standard PDB format.
 The distribution of modified PDB format data including the records: HEADER,
 CAVEAT, REVDAT, SPRSDE, DBREF, SEQADV, and MODRES are not allowed.
 .
 * The user assumes all responsibility for insuring that intellectual property
 claims associated with any data set deposited in the PDB archive are honored.
 It should be understood that the PDB data files do not contain any information
 on intellectual property claims with the exception in some cases of a reference
 for a patent involving the structure.
 .
 * Any opinion, findings, and conclusions expressed in the PDB archive by the
 authors/contributors do not necessarily reflect the views of the wwPDB.
 .
 * The data in the PDB archive are provided on an "as is" basis.  The wwPDB
 nor its comprising institutions cannot be held liable to any party for direct,
 indirect, special, incidental, or consequential damages, including lost
 profits, arising from the use of PDB materials.
 .
 * Resources on this site are provided without warranty of any kind, either
 expressed or implied. This includes but is not limited to merchantability or
 fitness for a particular purpose. The institutions managing this site make
 no representation that these resources will not infringe any patent or other
 proprietary right.
Comment: The files in examples/ are in the public domain, and can be copied 
 and distributed with no restriction. It is scientific data from the Protein
 Data Bank (http://www.pdb.org) and the database ASTRAL 
 (http://astral.berkeley.edu).

Files: debian/*
Copyright: © 2007-2008, Morten Kjeldgaard <mok@bioxray.au.dk>
           © 2008-2015, Andreas Tille <tille@debian.org>
License: GPL-3+

License: GPL-2+
  THESEUS is free software; you can redistribute it and/or modify it
  under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.
 .
  This package is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 .
  You should have received a copy of the GNU General Public License
  along with this package; if not, write to the Free Software
  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
 .
 On Debian systems, the complete text of the GNU General Public
 License version 2 can be found in `/usr/share/common-licenses/GPL-2'.

License: GPL-3+
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.
 .
 This program is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 .
  On a Debian system, the GNU GPL license is distributed in the file
 ‘/usr/share/common-licenses/GPL’.

