      0     .    :    .    :    .    :    .    :    .    : 
        MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHL
        | |   |       | |        | | | |||  || |   |  |   
        MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF---

     50     .    :    .    :    .    :    .    :    .    : 
        KSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI
           |    |  |  ||  |  | |   |           |   ||     
        ---DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRV

    100     .    :    .    :    .    :    .    :    .    
        PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYK
                | |    |    | || | |  |  | |    |     | 
        DPVNFKLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVTEK-----YR


gap opens:           2
gap extensions:      9
num matches:         41
num mismatches:      96
num positive scores: 91
num negative scores: 46


Clipping alignment to (5, 100)
      0     .    :    .    :    .    :    .    :    .    : 
        GEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDE
         |       | |        | | | |||  || |   |  |      | 
        TERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DL

     50     .    :    .    :    .    :    .    :    . 
        MKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI
           |  |  ||  |  | |   |           |   ||     
        HPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRV


gap opens:           1
gap extensions:      5
num matches:         26
num mismatches:      63
num positive scores: 55
num negative scores: 34
