// FRAGMENT(main)
#include <iostream>
#include <seqan/align.h>

using namespace seqan;

int main()
{
    typedef String<char> TSequence;                 // sequence type
    typedef Align<TSequence,ArrayGaps> TAlign;      // align type

    TSequence seq1 = "CDFGHC";
    TSequence seq2 = "CDEFGAHC";

    TAlign align;
    resize(rows(align), 2);
    assignSource(row(align,0),seq1);
    assignSource(row(align,1),seq2);

// FRAGMENT(alignment)
    int score = globalAlignment(align, Score<int,Simple>(0,-1,-1),-2,2);
    ::std::cout << "Score: " << score << ::std::endl;
    ::std::cout << align << ::std::endl;

    return 0;
}
