sumOfPairsScore

| Function sumOfPairsScore Given a multiple alignment, this function calculates the sum-of-pairs score. sumOfPairsScore(graph, score_type) Include Headers seqan/graph_msa.h Parameters
graph | An alignment graph. Types: Alignment Graph
score_type | A score object. Types: Score
Remarks This function does NOT assume independent columns. That is, gap openings are properly scored. If you want the fast version assuming independ columns use sumOfPairsScoreInd. Return Values void SeqAn - Sequence Analysis Library - www.seqan.de

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