AlignedReadStoreElement

| Member Function AlignedReadStoreElement Constructor AlignedReadStoreElement<> () AlignedReadStoreElement<TPos[, TGapAnchor[, TSpec]]> () AlignedReadStoreElement<TPos[, TGapAnchor[, TSpec]]> (id, readId, contigId, beginPos, endPos[, gaps]) Parameters
id | The alignment id refers to associated alignment information in alignQualityStore or alignedReadTagStore.
readId | Refers to the aligned read in the readStore.
contigId | Refers to the contig in the contigStore the read is aligned with.
beginPos | Begin position of the alignment in gap-space.
endPos | End position of the alignment in gap-space.
gaps | Read gap anchors.
Remarks The default constructor sets all ids to INVALID_ID and beginPos and endPos to 0. Member of AlignedReadStoreElement SeqAn - Sequence Analysis Library - www.seqan.de

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