BlastHsp

| Class BlastHsp Object for storing Blast HSPs.
BlastHsp
BasicInfo | BlastN | BlastP | FullInfo
BlastHsp<TBlastSpec, TInfoSpec> Include Headers blast.h Parameters
TBlastSpec | The type of Blast report to be parsed. Types: BlastN, BlastP Default: BlastN
TInfoSpec | The specializing type determining the amount of information to be stored. Types: BasicInfo, FullInfo Default: BasicInfo Remarks: BasicInfo stores begin and end positions on query and database sequence, as well as the alignment. FullInfo stores additional information such as score, e-value...
Specializations
BasicInfo | Stores only the basic pieces of information delivered with an alignment in a Blast report.
BlastN | For BlastN Blast reports.
BlastP | For BlastP Blast reports.
FullInfo | Stores all pieces of information delivered with an alignment in a Blast report.
Functions
getAlignment | Turns a HSP from a Blast search into an Alignment object.
getDatabaseBegin | The begin position of the HSP on the database sequence.
getDatabaseEnd | The end position of the HSP on the database sequence.
getEValue | The e-value associated with a Blast HSP.
getQueryBegin | The begin position of the HSP on the query sequence.
getQueryEnd | The end position of the HSP on the query sequence.
length | The number of items/characters.
Example Programs Blast Reports SeqAn - Sequence Analysis Library - www.seqan.de

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