File Format

| Tag File Format A file format. Include Headers seqan/file.h Functions
appendSeqs | Appends all sequences stored in files of directory to a StringSet.
assignCroppedSeqId | Extracts the sequence id up to the first whitespace of a sequence file fragment.
assignQual | Extracts the quality values of a sequence file fragment.
assignQualId | Extracts the quality value id of a sequence file fragment.
assignSeq | Extracts the sequence part of a sequence file fragment.
assignSeqId | Extracts the sequence id of a sequence file fragment.
guessFormat | Guesses a file format from the contents of a sequence file.
guessFormatFromFilename | Guesses a file format from a sequence file name.
printAlignment | Prints a window of the visible layout of reads into a outstream.
read | Loads a record from file.
read | Loads records from a file.
read | Loads records from a file.
split | Divides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter.
write | Saves records to a file.
write | Saves records to a file.
Tags
CGViz | CGViz file format for sequences. Only output.
Embl | EMBL format for sequences.
Fasta | FASTA file format for sequences.
Raw | The file contains data in a raw format. Raw file format for sequences.
Fastq | FASTQ file format for sequences.
QSeq | QSeq format, used for most of the Illumina read files.
Genbank | Genbank format for sequences from the Genbank database.
Fasta alignment | FASTA alignment file format for sequences.
ScoreMatrixFile | Score matrix file.
Gff | Gff annotation file.
Gtf | Gtf annotation file.
Ucsc | Ucsc Genome Browser annotation file (a.k.a. knownGene format).
UcscIsoforms | Ucsc Genome Browser isoforms file (a.k.a. knownIsoforms format).
Amos message file | Amos message file.
Sam | Sam mapping file.
See Also guessFileFormat, FileFormat SeqAn - Sequence Analysis Library - www.seqan.de

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