alignment

| Function alignment Returns an alignment of the occurences of the representative substring in the index text. alignment(iterator) Include Headers seqan/index.h Parameters
iterator | An iterator of a suffix tree. Types: VSTree Iterator
Remarks The representative must uniquely occur in every sequence (e.g. in Mums), otherwise the seed returned is one many. Return Values A local alignment corresponding to the seed of the iterator. SeqAn - Sequence Analysis Library - www.seqan.de

Page built @2011/02/08 21:37:02