bandedAlignment

| Function bandedAlignment Calculates a banded alignment around a Seed. bandedAlignmnet(align, seed, k, score) Include Headers seqan/seeds.h Parameters
align | An alignment dataStructure containing two sequences (sections). The sequence (parts) must be equal to the part which is covered by the seed. Types: Align
seed | The seed for wich the banded alignmnent shall be constructed. Types: Seed
k | A value describing the additional extension of the diagonal band.
score | The score matrix used. Types: Simple Score
Remarks Use the function globalAlignment with the tag BandedNeedlemanWunsch or BandedGotoh for more general banded alignment without a seed. Return Values The score of the optimal banded alignment given in align. See Also Global Alignment Algorithms, globalAlignment SeqAn - Sequence Analysis Library - www.seqan.de

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