Pseudocount

| Class Pseudocount Holds the pseudocounts for each residue of a given sequence alphabet.
Pseudocount
CMode | PMode
Pseudocount<TValue, TSpec> Include Headers seqan/find_motif.h Parameters
TSpec | Specialization tag for determining the pseudocount method. Types: CMode, CMode, PMode, PMode
TValue | The type of sequence which is considered. Metafunctions: Value Types: AminoAcid, Dna
Specializations
CMode | Represents the C ("constant") computation scheme for handling "zero" probabilities.
PMode | Represents the P computation scheme for handling "zero" probabilities.
Metafunctions
Value | Type of the items in the container.
Functions
convertSetOfPatternsToProfile | Converts a set of sequence patterns into a profile.
normalize | Determines the normalized frequencies.
SeqAn - Sequence Analysis Library - www.seqan.de

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