countOccurrences

| Function countOccurrences Returns the number of occurences of representative substring or a q-gram in the index text. countOccurrences(iterator) countOccurrences(index, shape) Include Headers seqan/index.h Parameters
iterator | An iterator of a suffix tree. Types: VSTree Iterator
index | A q-gram index. Types: IndexQGram
shape | A shape object. Note: The shape stores the q-gram of the last call to hash or hashNext. Types: Shape
Return Values The number of positions where the representative of iterator occurs in the text (see EsaText). If iterator's container type is TIndex the return type is Size<TIndex>::Type. The number of positions where the q-gram stored in shape occurs in the text (see QGramText). If the type of index is TIndex the return type is Size<TIndex>::Type. Example Programs Supermaximal Repeats, Constraint Iterator See Also countOccurrencesMultiple SeqAn - Sequence Analysis Library - www.seqan.de

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