getAlignment

| Function getAlignment Constructs a alignment from a ChainedSeed. getAlignment(seed, align, query, database, scoreMatrix) Include Headers seqan/seeds.h Parameters
seed | The alignment foundation. Types: ChainedSeed
align | An emtpy alignment object, that stores the constructed alignment. Types: Align
query | The Query sequence. Types: String
database | The database sequence. Types: String
scoreMatrix | The scoring matrix. Types: Simple Score
Return Values Score of the alignment. SeqAn - Sequence Analysis Library - www.seqan.de

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