WildShiftAnd

| Class Specialization WildShiftAnd Exact string matching with wildcards using bit parallelism. The Shift-And algorithm is applicable to search small patterns in texts using a small alphabet.
Pattern
WildShiftAnd
Pattern<TNeedle, WildShiftAnd> Include Headers seqan/find.h Parameters
TNeedle | The needle type. Types: String
Remarks The supported wildcards are * (zero or more occurence), + (one or more occurences), ? (optional character), . (every character), character classes (e.g. [a-z]) and bounded repeats (e.g. {n,m}). After the find-Method returned the Finder will point to the last position of the occurence We encourage the user to intialize the Pattern with a String<char> (setHost or the C'tor). If you use for instance String <Dna> instead you won't be able to specify wildcards Specialization of Pattern Metafunctions
Host | Type of the object a given object depends on. (Pattern)
Needle | Returns the needle type of a Pattern type. (Pattern)
ScoringScheme | Returns the scoring scheme of an approximate searching algorithm. (Pattern)
Functions
find | Search for a Pattern in a Finder object. (Pattern)
findBegin | Search the begin of an approximate match. (Pattern)
host | The object a given object depends on. (Pattern)
needle | Returns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern)
position | Position of an iterator. (Pattern)
scoringScheme | The scoring scheme used for finding or aligning. (Pattern)
setNeedle | Sets the needle of a Pattern object and optionally induces preprocessing. (Pattern)
setScoringScheme | Sets the scoring scheme used for finding or aligning. (Pattern)
Example Programs Wildcard Searching SeqAn - Sequence Analysis Library - www.seqan.de

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