extendSeed

| Function extendSeed Extends a seed. extendSeed(seed, query, database, direction, tag) extendSeed(seed, scoreDropOff, scoreMatrix, query, database, direction, tag) Include Headers seqan/seeds.h Parameters
seed | The seed to extend. Types: Seed
query | The query sequence. The database sequence. Types: String, String
direction | Defines the direction in which the seed should be extended. 0 = left, 1 = right, 2 = both
scoreDropOff | The score drop after which the extension should stop. The extension stops if this value is exceeded. Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
scoreMatrix | The scoring scheme. Types: Simple Score Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
tag | The algorithm to use. Types: GappedXDrop, MatchExtend, UngappedXDrop
See Also Seed Extension SeqAn - Sequence Analysis Library - www.seqan.de

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