Bfam

| Class Specialization Bfam Backward Factor Automaton Matching algorithm.
Pattern
Bfam
Bfam<Oracle> | Bfam<Trie>
Pattern<TNeedle, Bfam<TAutomaton> > Include Headers seqan/find.h Parameters
TNeedle | The needle type. Types: String
TAutomaton | A tag that specifies the used automaton. Default: Bfam<Oracle>
Remarks To be used in combination with the default specialization of Finder. Specialization of Pattern Specializations
Bfam<Oracle> | Backward Oracle Matching algorithm.
Bfam<Trie> | Backward Suffix Trie Matching algorithm.
Metafunctions
Host | Type of the object a given object depends on. (Pattern)
Needle | Returns the needle type of a Pattern type. (Pattern)
ScoringScheme | Returns the scoring scheme of an approximate searching algorithm. (Pattern)
Functions
find | Search for a Pattern in a Finder object. (Pattern)
findBegin | Search the begin of an approximate match. (Pattern)
host | The object a given object depends on. (Pattern)
needle | Returns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern)
position | Position of an iterator. (Pattern)
scoringScheme | The scoring scheme used for finding or aligning. (Pattern)
setNeedle | Sets the needle of a Pattern object and optionally induces preprocessing. (Pattern)
setScoringScheme | Sets the scoring scheme used for finding or aligning. (Pattern)
See Also MultiBfam SeqAn - Sequence Analysis Library - www.seqan.de

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