# PHD2 PARA
# --------------------------------------------------------------------------------
# Profile-based neural network prediction (PHD2)
# --------------------------------------------------------------------------------
# Copyright: 	Burkhard Rost, LION Biosciences AG, Heidelberg, Germany
# Contact:   	rost@columbia.edu
# Date:  	Dec 27, 1999
# 
# --------------------------------------------------------------------------------
# 
# directories
# 
#dir_home	/home/rost/nn/phd2xx/
#dir_net 	

# --------------------------------------------------
# first level (sequence-to-structure)
# format: 	'kwd TAB name'
# 
file_1	SEChssp1_17uall.jct
file_1	SEChssp1_17ball.jct
file_1	SEChssp1_21uall.jct
file_1	SEChssp1_21ball.jct

# --------------------------------------------------
# second level (structure-to-structure)
# format:  	'kwd TAB name TAB ptr2fst'
# ptr2fst:	which first level used as input to snd
# 
file_2	SEChssp2_17uuall.jct	1
file_2	SEChssp2_17uball.jct	1
file_2	SEChssp2_17buall.jct	2
file_2	SEChssp2_17bball.jct	2
file_2	SEChssp2_21uuall.jct	3
file_2	SEChssp2_21uball.jct	3
file_2	SEChssp2_21buall.jct	4
file_2	SEChssp2_21bball.jct	4

# --------------------------------------------------
# format:       'kwd TAB mode TAB ptr2file'
# kwd:          fin
# mode:         <sec>:
# ptr2file:	which file to take
finfin	sec	2:1-12

