# Perl-RDB 
# PROFsec
# 
# Copyright          : Burkhard Rost, CUBIC NYC / LION Heidelberg
# Email              : rost@columbia.edu
# WWW                : http://cubic.bioc.columbia.edu
# Version            : 2000.02
# 
# --------------------------------------------------------------------------------
# About your protein :
# 
# VALUE    PROT_ID   : 9rnt
# VALUE    PROT_NCHN : 1
# VALUE    PROT_NRES : 104
# VALUE    PROT_NALI : 14
# VALUE    PROT_NFAR : 3
# VALUE    PROT_NFAR50-5: 10
# VALUE    PROT_NFAR40-5: 9
# VALUE    PROT_NFAR30-5: 2
# VALUE    PROT_NFAR5-5: 0
# 
# --------------------------------------------------------------------------------
# About the alignment:
# 
# VALUE    ALI_ORIG  : 9rnt.saf
# VALUE    ALI_USED  : PROF1474259rnt.hssp
# 
# --------------------------------------------------------------------------------
# About PROF specifics:
# 
# VALUE    PROF_FPAR : sec=/nfs/home1/yachdav/work/SNAP/prof/net/PROFsec_best.par
# VALUE    PROF_NNET : sec=2
# 
# --------------------------------------------------------------------------------
# Notation used      :
# 
# NOTATION HEADER    : PROTEIN
# NOTATION PROT_ID   : identifier of protein [w]
# NOTATION PROT_NRES : number of residues [d]
# NOTATION PROT_NCHN : number of chains (if PDB protein) [d]
# NOTATION PROT_NALI : number of proteins aligned in family [d]
# NOTATION PROT_NFAR : number of distant relatives [d]
# 
# NOTATION HEADER    : ALIGNMENT
# NOTATION HEADER    : ALIGNMENT: input file
# NOTATION HEADER    : ALIGNMENT: input file used
# 
# NOTATION HEADER    : INTERNAL
# NOTATION PROF_FPAR : name of parameter file, used [w]
# NOTATION PROF_NNET : number of networks used for prediction [d]
# 
# 
# NOTATION BODY      : PROTEIN
# NOTATION NO        : counting residues [d]
# NOTATION AA        : amino acid one letter code [A-Z!a-z]
# NOTATION CHN       : protein chain [A-Z!a-z]
# 
# 
# NOTATION BODY      : PROFsec
# NOTATION OHEL      : observed secondary structure: H=helix, E=extended (sheet), blank=other (loop)
# NOTATION PHEL      : PROF predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PROF = PROF: Profile network prediction HeiDelberg
# NOTATION RI_S      : reliability index for PROFsec prediction (0=lo 9=high) Note: for the brief presentation strong predictions marked by '*'
# NOTATION pH        : 'probability' for assigning helix (1=high, 0=low)
# NOTATION pE        : 'probability' for assigning strand (1=high, 0=low)
# NOTATION pL        : 'probability' for assigning neither helix, nor strand (1=high, 0=low)
# NOTATION OtH       : actual neural network output from PROFsec for helix unit
# NOTATION OtE       : actual neural network output from PROFsec for strand unit
# NOTATION OtL       : actual neural network output from PROFsec for 'no-regular' unit
# 
# --------------------------------------------------------------------------------
# 
No	AA	OHEL	PHEL	RI_S	pH	pE	pL	OtH	OtE	OtL
1	A	L	L	9	0	0	9	1	2	95
2	C	L	L	0	1	4	4	14	44	52
3	D	L	E	1	1	5	3	12	53	41
4	Y	L	E	1	1	5	3	12	57	39
5	T	L	E	1	1	5	3	14	55	39
6	C	L	L	0	1	3	4	19	41	50
7	G	L	L	5	1	1	6	15	20	71
8	S	L	L	3	1	2	5	18	30	61
9	N	L	E	0	1	4	3	18	49	42
10	C	L	E	0	1	4	3	13	49	41
11	Y	L	E	0	1	4	3	16	48	42
12	S	L	L	1	1	3	4	17	37	49
13	S	L	H	2	5	1	2	59	17	30
14	S	L	H	3	6	0	3	64	7	31
15	D	L	H	5	7	0	1	77	4	20
16	V	L	H	7	8	0	1	81	8	11
17	S	L	H	7	8	0	1	82	6	12
18	T	L	H	7	8	0	0	86	3	9
19	A	L	H	7	8	0	1	86	2	10
20	Q	L	H	7	8	0	1	82	5	12
21	A	L	H	3	6	0	2	66	4	28
22	A	L	H	0	4	0	4	50	6	46
23	G	L	L	2	3	0	5	37	7	59
24	Y	L	L	2	3	1	5	32	17	55
25	K	L	L	0	2	3	3	26	40	42
26	L	L	E	1	1	4	3	21	48	37
27	H	L	E	0	2	3	3	24	43	41
28	E	L	L	1	2	3	4	24	33	51
29	D	L	L	4	2	1	6	25	15	68
30	G	L	L	5	2	0	6	23	10	74
31	E	L	L	4	2	1	6	23	16	69
32	T	L	L	3	1	2	5	17	25	62
33	V	L	L	4	1	2	6	16	24	66
34	G	L	L	5	1	1	7	13	18	73
35	S	L	L	5	1	1	7	16	13	74
36	N	L	L	6	1	1	7	16	12	76
37	S	L	L	5	1	1	6	14	17	72
38	Y	L	L	4	0	2	6	8	25	71
39	P	L	L	5	1	1	6	12	19	70
40	H	L	L	4	1	2	6	12	24	66
41	K	L	L	3	1	2	5	13	31	61
42	Y	L	L	2	1	2	5	16	31	58
43	N	L	L	3	1	2	6	16	26	63
44	N	L	L	4	1	1	6	16	20	66
45	Y	L	L	3	2	2	5	23	22	62
46	E	L	L	3	1	2	5	20	28	60
47	G	L	L	2	1	2	5	16	32	60
48	F	L	L	0	0	4	4	10	44	52
49	D	L	E	1	0	5	3	6	57	41
50	F	L	E	3	0	6	3	9	64	32
51	S	L	E	2	0	5	3	7	60	36
52	V	L	E	0	0	4	4	10	48	48
53	S	L	L	5	0	2	7	8	22	74
54	S	L	L	8	0	0	8	5	8	88
55	P	L	L	5	0	1	7	6	19	77
56	Y	L	E	1	0	5	3	8	55	41
57	Y	L	E	4	0	6	2	6	70	29
58	E	L	E	4	0	6	2	8	72	24
59	W	L	E	4	0	6	2	4	71	28
60	P	L	E	3	0	6	3	6	64	31
61	I	L	E	3	0	6	2	8	66	30
62	L	L	E	1	1	5	3	12	56	38
63	S	L	L	1	1	3	5	12	39	55
64	S	L	L	4	1	2	6	19	24	66
65	G	L	L	5	1	1	6	16	21	71
66	D	L	E	0	1	4	4	13	49	46
67	V	L	E	3	0	6	2	8	68	30
68	Y	L	E	3	1	5	3	11	63	33
69	S	L	E	0	1	4	4	12	49	48
70	G	L	L	5	0	2	7	9	22	73
71	G	L	L	6	0	1	7	10	17	78
72	S	L	L	5	0	1	7	9	19	75
73	P	L	L	6	1	1	7	15	12	77
74	G	L	L	5	1	1	7	16	13	75
75	A	L	L	5	1	1	6	17	17	71
76	D	L	L	3	0	2	6	8	28	66
77	R	L	E	4	0	6	2	5	70	28
78	V	L	E	7	0	8	1	3	84	13
79	V	L	E	8	0	9	0	2	90	7
80	F	L	E	8	0	8	0	2	89	8
81	N	L	E	1	0	5	4	3	58	41
82	E	L	L	5	0	1	7	8	18	76
83	N	L	L	6	1	0	7	14	8	81
84	N	L	L	5	1	1	7	17	12	73
85	Q	L	L	1	1	3	4	13	39	50
86	L	L	E	2	1	5	3	11	56	36
87	A	L	E	3	0	6	3	9	63	32
88	G	L	E	3	0	6	3	4	69	32
89	V	L	E	5	0	7	1	6	77	20
90	I	L	E	7	0	8	1	4	86	11
91	T	L	E	6	0	7	1	5	78	18
92	H	L	E	4	0	6	2	6	70	27
93	T	L	E	0	0	5	4	9	53	44
94	G	L	L	2	1	3	5	11	34	60
95	A	L	L	3	1	2	6	16	26	65
96	S	L	L	3	1	2	6	13	26	65
97	G	L	L	4	2	1	6	23	16	70
98	N	L	L	5	1	1	7	17	14	74
99	N	L	L	0	1	4	4	16	42	45
100	F	L	E	4	0	6	2	9	67	25
101	V	L	E	4	0	7	2	9	70	21
102	E	L	E	3	0	6	2	6	67	29
103	C	L	L	0	0	4	5	7	45	53
104	T	L	L	8	0	0	9	2	5	93
