# Perl-RDB 
# PROFsec
# 
# Copyright          : Burkhard Rost, CUBIC NYC / LION Heidelberg
# Email              : rost@columbia.edu
# WWW                : http://cubic.bioc.columbia.edu
# Version            : 2000.02
# 
# --------------------------------------------------------------------------------
# About your protein :
# 
# VALUE    PROT_ID   : 1ppt
# VALUE    PROT_NCHN : 1
# VALUE    PROT_NRES : 36
# VALUE    PROT_NALI : 31
# VALUE    PROT_NFAR : 26
# VALUE    PROT_NFAR50-5: 6
# VALUE    PROT_NFAR40-5: 4
# VALUE    PROT_NFAR30-5: 3
# VALUE    PROT_NFAR5-5: 0
# 
# --------------------------------------------------------------------------------
# About the alignment:
# 
# VALUE    ALI_ORIG  : 2ppt.fastamul
# VALUE    ALI_USED  : PROF1471452ppt.hssp
# 
# --------------------------------------------------------------------------------
# About PROF specifics:
# 
# VALUE    PROF_FPAR : sec=/nfs/home1/yachdav/work/SNAP/prof/net/PROFsec_best.par
# VALUE    PROF_NNET : sec=2
# 
# --------------------------------------------------------------------------------
# Notation used      :
# 
# NOTATION HEADER    : PROTEIN
# NOTATION PROT_ID   : identifier of protein [w]
# NOTATION PROT_NRES : number of residues [d]
# NOTATION PROT_NCHN : number of chains (if PDB protein) [d]
# NOTATION PROT_NALI : number of proteins aligned in family [d]
# NOTATION PROT_NFAR : number of distant relatives [d]
# 
# NOTATION HEADER    : ALIGNMENT
# NOTATION HEADER    : ALIGNMENT: input file
# NOTATION HEADER    : ALIGNMENT: input file used
# 
# NOTATION HEADER    : INTERNAL
# NOTATION PROF_FPAR : name of parameter file, used [w]
# NOTATION PROF_NNET : number of networks used for prediction [d]
# 
# 
# NOTATION BODY      : PROTEIN
# NOTATION NO        : counting residues [d]
# NOTATION AA        : amino acid one letter code [A-Z!a-z]
# NOTATION CHN       : protein chain [A-Z!a-z]
# 
# 
# NOTATION BODY      : PROFsec
# NOTATION OHEL      : observed secondary structure: H=helix, E=extended (sheet), blank=other (loop)
# NOTATION PHEL      : PROF predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PROF = PROF: Profile network prediction HeiDelberg
# NOTATION RI_S      : reliability index for PROFsec prediction (0=lo 9=high) Note: for the brief presentation strong predictions marked by '*'
# NOTATION pH        : 'probability' for assigning helix (1=high, 0=low)
# NOTATION pE        : 'probability' for assigning strand (1=high, 0=low)
# NOTATION pL        : 'probability' for assigning neither helix, nor strand (1=high, 0=low)
# NOTATION OtH       : actual neural network output from PROFsec for helix unit
# NOTATION OtE       : actual neural network output from PROFsec for strand unit
# NOTATION OtL       : actual neural network output from PROFsec for 'no-regular' unit
# 
# --------------------------------------------------------------------------------
# 
No	AA	OHEL	PHEL	RI_S	pH	pE	pL	OtH	OtE	OtL
1	G	L	L	9	0	0	9	0	2	96
2	P	L	L	8	0	0	8	4	6	89
3	S	L	L	7	0	1	8	4	10	86
4	Q	L	L	7	0	1	8	3	11	84
5	P	L	L	8	0	0	8	4	8	88
6	T	L	L	7	0	1	8	3	11	87
7	Y	L	L	7	0	1	8	1	14	88
8	P	L	L	7	0	0	8	4	9	87
9	G	L	L	7	0	0	8	6	9	86
10	D	L	L	6	0	1	8	6	13	81
11	D	L	L	8	0	0	8	3	9	90
12	A	L	L	8	0	0	9	1	8	93
13	P	L	L	8	0	0	9	6	1	91
14	V	L	H	7	9	0	0	88	0	9
15	E	L	H	8	9	0	0	92	0	5
16	D	L	H	8	9	0	0	93	1	5
17	L	L	H	8	9	0	0	92	0	5
18	I	L	H	8	9	0	0	91	0	5
19	R	L	H	8	9	0	0	91	1	5
20	F	L	H	8	9	0	0	93	1	4
21	Y	L	H	9	9	0	0	94	0	4
22	D	L	H	8	9	0	0	94	0	5
23	N	L	H	8	9	0	0	93	0	5
24	L	L	H	8	9	0	0	92	0	6
25	Q	L	H	8	9	0	0	92	0	5
26	Q	L	H	8	9	0	0	91	0	8
27	Y	L	H	8	9	0	0	91	1	7
28	L	L	H	8	9	0	0	89	2	7
29	N	L	H	7	8	0	1	87	3	11
30	V	L	H	7	8	0	1	83	4	13
31	V	L	H	3	6	0	2	66	7	30
32	T	L	H	0	4	1	4	45	10	44
33	R	L	L	2	3	1	5	33	12	53
34	H	L	L	2	2	2	5	25	24	54
35	R	L	L	4	1	2	6	18	24	64
36	Y	L	L	8	0	0	9	2	5	92
