PXVCF2FA(1)

NAME
pxvcf2fa - Convert vcf file to fasta.

SYNOPSIS
pxvcf2fa [OPTION]... [FILE]...

DESCRIPTION
Convert vcf file to fasta. Currently only handles haploid data; phased data will come soon. Can read from stdin or file.

-s, --seqf=FILE
    input vcf file, stdin otherwise

-o, --outf=FILE
    output fasta sequence file, stout otherwise

-u, --uppercase
    export characters in uppercase

-h, --help
    display this help and exit

-V, --version
    display version and exit

REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.