Date: 2015-10-02T22:16:11+00:00

Actual source code: dmmbvec.cxx
petsc-3.6.2 2015-10-02
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      1: #include <petsc/private/dmmbimpl.h> /*I  "petscdmmoab.h"   I*/
      2: #include <petsc/private/vecimpl.h>

      4: #include <petscdmmoab.h>
      5: #include <MBTagConventions.hpp>

      7: /* declare some private DMMoab specific overrides */
      8: static PetscErrorCode DMCreateVector_Moab_Private(DM dm,moab::Tag tag,const moab::Range* userrange,PetscBool is_global_vec,PetscBool destroy_tag,Vec *vec);
      9: static PetscErrorCode DMVecUserDestroy_Moab(void *user);
     10: static PetscErrorCode DMVecDuplicate_Moab(Vec x,Vec *y);
     11: static PetscErrorCode DMVecCreateTagName_Moab_Private(moab::ParallelComm *pcomm,char** tag_name);

     15: /*@C
     16:   DMMoabCreateVector - Create a Vec from either an existing tag, or a specified tag size, and a range of entities

     18:   Collective on MPI_Comm

     20:   Input Parameter:
     21: + dm              - The DMMoab object being set
     22: . tag             - If non-zero, block size will be taken from the tag size
     23: . range           - If non-empty, Vec corresponds to these entities, otherwise to the entities set on the DMMoab
     24: . is_global_vec   - If true, this is a local representation of the Vec (including ghosts in parallel), otherwise a truly parallel one
     25: . destroy_tag     - If true, MOAB tag is destroyed with Vec, otherwise it is left on MOAB

     27:   Output Parameter:
     28: . vec             - The created vector

     30:   Level: beginner

     32: .keywords: Vec, create

     34: .seealso: VecCreate()
     35: @*/
     36: PetscErrorCode DMMoabCreateVector(DM dm,moab::Tag tag,const moab::Range* range,PetscBool is_global_vec,PetscBool destroy_tag,Vec *vec)
     37: {
     38:   PetscErrorCode     ierr;

     41:   if(!tag && (!range || range->empty())) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Both tag and range cannot be null.");

     43:   DMCreateVector_Moab_Private(dm,tag,range,is_global_vec,destroy_tag,vec);
     44:   return(0);
     45: }

     50: /*@C
     51:   DMMoabGetVecTag - Get the MOAB tag associated with this Vec

     53:   Input Parameter:
     54: . vec - Vec being queried

     56:   Output Parameter:
     57: . tag - Tag associated with this Vec. NULL if vec is a native PETSc Vec.

     59:   Level: beginner

     61: .keywords: DMMoab, MOAB tag

     63: .seealso: DMMoabCreateVector(), DMMoabGetVecRange()
     64: @*/
     65: PetscErrorCode DMMoabGetVecTag(Vec vec,moab::Tag *tag)
     66: {
     67:   PetscContainer  moabdata;
     68:   Vec_MOAB        *vmoab;
     69:   PetscErrorCode  ierr;

     74:   /* Get the MOAB private data */
     75:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
     76:   PetscContainerGetPointer(moabdata, (void**) &vmoab);

     78:   *tag = vmoab->tag;
     79:   return(0);
     80: }

     85: /*@C
     86:   DMMoabGetVecRange - Get the MOAB entities associated with this Vec

     88:   Input Parameter:
     89: . vec   - Vec being queried

     91:   Output Parameter:
     92: . range - Entities associated with this Vec. NULL if vec is a native PETSc Vec.

     94:   Level: beginner

     96: .keywords: DMMoab, MOAB range

     98: .seealso: DMMoabCreateVector(), DMMoabGetVecTag()
     99: @*/
    100: PetscErrorCode DMMoabGetVecRange(Vec vec,moab::Range *range)
    101: {
    102:   PetscContainer  moabdata;
    103:   Vec_MOAB        *vmoab;
    104:   PetscErrorCode  ierr;

    109:   /* Get the MOAB private data handle */
    110:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
    111:   PetscContainerGetPointer(moabdata, (void**) &vmoab);

    113:   *range = *vmoab->tag_range;
    114:   return(0);
    115: }

    120: /*@C
    121:   DMMoabVecGetArray - Returns the writable direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities

    123:   Collective on MPI_Comm

    125:   Input Parameter:
    126: . dm              - The DMMoab object being set
    127: . vec             - The Vector whose underlying data is requested

    129:   Output Parameter:
    130: . array           - The local data array

    132:   Level: intermediate

    134: .keywords: MOAB, distributed array

    136: .seealso: DMMoabVecRestoreArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead()
    137: @*/
    138: PetscErrorCode  DMMoabVecGetArray(DM dm,Vec vec,void* array)
    139: {
    140:   DM_Moab        *dmmoab;
    141:   moab::ErrorCode merr;
    142:   PetscErrorCode  ierr;
    143:   PetscInt        count,i,f;
    144:   moab::Tag       vtag;
    145:   PetscScalar     **varray;
    146:   PetscScalar     *marray;
    147:   PetscContainer  moabdata;
    148:   Vec_MOAB        *vmoab,*xmoab;

    154:   dmmoab=(DM_Moab*)dm->data;

    156:   /* Get the Vec_MOAB struct for the original vector */
    157:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
    158:   PetscContainerGetPointer(moabdata, (void**)&vmoab);

    160:   /* Get the real scalar array handle */
    161:   varray = reinterpret_cast<PetscScalar**>(array);

    163:   if (vmoab->is_native_vec) {

    165:     /* get the local representation of the arrays from Vectors */
    166:     DMGetLocalVector(dm,&vmoab->local);
    167:     DMGlobalToLocalBegin(dm,vec,INSERT_VALUES,vmoab->local);
    168:     DMGlobalToLocalEnd(dm,vec,INSERT_VALUES,vmoab->local);

    170:     /* Get the Vec_MOAB struct for the original vector */
    171:     PetscObjectQuery((PetscObject)vmoab->local,"MOABData", (PetscObject*) &moabdata);
    172:     PetscContainerGetPointer(moabdata, (void**)&xmoab);

    174:     /* get the local representation of the arrays from Vectors */
    175:     VecGhostGetLocalForm(vmoab->local,&xmoab->local);
    176:     VecGhostUpdateBegin(vmoab->local,INSERT_VALUES,SCATTER_FORWARD);
    177:     VecGhostUpdateEnd(vmoab->local,INSERT_VALUES,SCATTER_FORWARD);

    179:     VecGetArray(xmoab->local, varray);
    180:   }
    181:   else {

    183:     /* Get the MOAB private data */
    184:     DMMoabGetVecTag(vec,&vtag);

    186:     /* exchange the data into ghost cells first */
    187:     merr = dmmoab->pcomm->exchange_tags(vtag,*dmmoab->vlocal);MBERRNM(merr);

    189:     PetscMalloc1((dmmoab->nloc+dmmoab->nghost)*dmmoab->numFields,varray);

    191:     /* Get the array data for local entities */
    192:     merr = dmmoab->mbiface->tag_iterate(vtag,dmmoab->vlocal->begin(),dmmoab->vlocal->end(),count,reinterpret_cast<void*&>(marray),false);MBERRNM(merr);
    193:     if (count!=dmmoab->nloc+dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.",count,dmmoab->nloc+dmmoab->nghost);

    195:     i=0;
    196:     for(moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
    197:       for (f=0;f<dmmoab->numFields;f++,i++)
    198:         (*varray)[dmmoab->lidmap[(PetscInt)*iter]*dmmoab->numFields+f]=marray[i];
    199:     }
    200:   }
    201:   return(0);
    202: }

    207: /*@C
    208:   DMMoabVecRestoreArray - Restores the writable direct access array obtained via DMMoabVecGetArray

    210:   Collective on MPI_Comm

    212:   Input Parameter:
    213: + dm              - The DMMoab object being set
    214: . vec             - The Vector whose underlying data is requested
    215: . array           - The local data array

    217:   Level: intermediate

    219: .keywords: MOAB, distributed array

    221: .seealso: DMMoabVecGetArray(), DMMoabVecGetArrayRead(), DMMoabVecRestoreArrayRead()
    222: @*/
    223: PetscErrorCode  DMMoabVecRestoreArray(DM dm,Vec vec,void* array)
    224: {
    225:   DM_Moab        *dmmoab;
    226:   moab::ErrorCode merr;
    227:   PetscErrorCode  ierr;
    228:   moab::Tag       vtag;
    229:   PetscInt        count,i,f;
    230:   PetscScalar     **varray;
    231:   PetscScalar     *marray;
    232:   PetscContainer  moabdata;
    233:   Vec_MOAB        *vmoab,*xmoab;

    239:   dmmoab=(DM_Moab*)dm->data;

    241:   /* Get the Vec_MOAB struct for the original vector */
    242:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
    243:   PetscContainerGetPointer(moabdata, (void**)&vmoab);

    245:   /* Get the real scalar array handle */
    246:   varray = reinterpret_cast<PetscScalar**>(array);

    248:   if (vmoab->is_native_vec) {

    250:     /* Get the Vec_MOAB struct for the original vector */
    251:     PetscObjectQuery((PetscObject)vmoab->local,"MOABData", (PetscObject*) &moabdata);
    252:     PetscContainerGetPointer(moabdata, (void**)&xmoab);

    254:     /* get the local representation of the arrays from Vectors */
    255:     VecRestoreArray(xmoab->local, varray);
    256:     VecGhostUpdateBegin(vmoab->local,ADD_VALUES,SCATTER_REVERSE);
    257:     VecGhostUpdateEnd(vmoab->local,ADD_VALUES,SCATTER_REVERSE);
    258:     VecGhostRestoreLocalForm(vmoab->local,&xmoab->local);

    260:     /* restore local pieces */
    261:     DMLocalToGlobalBegin(dm,vmoab->local,INSERT_VALUES,vec);
    262:     DMLocalToGlobalEnd(dm,vmoab->local,INSERT_VALUES,vec);
    263:     DMRestoreLocalVector(dm, &vmoab->local);
    264:   }
    265:   else {

    267:     /* Get the MOAB private data */
    268:     DMMoabGetVecTag(vec,&vtag);

    270:     /* Get the array data for local entities */
    271:     merr = dmmoab->mbiface->tag_iterate(vtag,dmmoab->vlocal->begin(),dmmoab->vlocal->end(),count,reinterpret_cast<void*&>(marray),false);MBERRNM(merr);
    272:     if (count!=dmmoab->nloc+dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.",count,dmmoab->nloc+dmmoab->nghost);

    274:     i=0;
    275:     for(moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
    276:       for (f=0;f<dmmoab->numFields;f++,i++)
    277:       marray[i] = (*varray)[dmmoab->lidmap[(PetscInt)*iter]*dmmoab->numFields+f];
    278:     }

    280:     /* reduce the tags correctly -> should probably let the user choose how to reduce in the future
    281:       For all FEM residual based assembly calculations, MPI_SUM should serve well */
    282:     merr = dmmoab->pcomm->reduce_tags(vtag,MPI_SUM,*dmmoab->vlocal);MBERRV(dmmoab->mbiface,merr);

    284:     PetscFree(*varray);
    285:   }
    286:   return(0);
    287: }

    291: /*@C
    292:   DMMoabVecGetArrayRead - Returns the read-only direct access array to the local representation of MOAB tag data for the underlying vector using locally owned+ghosted range of entities

    294:   Collective on MPI_Comm

    296:   Input Parameter:
    297: + dm              - The DMMoab object being set
    298: . vec             - The Vector whose underlying data is requested

    300:   Output Parameter:
    301: . array           - The local data array

    303:   Level: intermediate

    305: .keywords: MOAB, distributed array

    307: .seealso: DMMoabVecRestoreArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray()
    308: @*/
    309: PetscErrorCode  DMMoabVecGetArrayRead(DM dm,Vec vec,void* array)
    310: {
    311:   DM_Moab        *dmmoab;
    312:   moab::ErrorCode merr;
    313:   PetscErrorCode  ierr;
    314:   PetscInt        count,i,f;
    315:   moab::Tag       vtag;
    316:   PetscScalar     **varray;
    317:   PetscScalar     *marray;
    318:   PetscContainer  moabdata;
    319:   Vec_MOAB        *vmoab,*xmoab;

    325:   dmmoab=(DM_Moab*)dm->data;

    327:   /* Get the Vec_MOAB struct for the original vector */
    328:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
    329:   PetscContainerGetPointer(moabdata, (void**)&vmoab);

    331:   /* Get the real scalar array handle */
    332:   varray = reinterpret_cast<PetscScalar**>(array);

    334:   if (vmoab->is_native_vec) {
    335:     /* get the local representation of the arrays from Vectors */
    336:     DMGetLocalVector(dm,&vmoab->local);
    337:     DMGlobalToLocalBegin(dm,vec,INSERT_VALUES,vmoab->local);
    338:     DMGlobalToLocalEnd(dm,vec,INSERT_VALUES,vmoab->local);

    340:     /* Get the Vec_MOAB struct for the original vector */
    341:     PetscObjectQuery((PetscObject)vmoab->local,"MOABData", (PetscObject*) &moabdata);
    342:     PetscContainerGetPointer(moabdata, (void**)&xmoab);

    344:     /* get the local representation of the arrays from Vectors */
    345:     VecGhostGetLocalForm(vmoab->local,&xmoab->local);
    346:     VecGhostUpdateBegin(vmoab->local,INSERT_VALUES,SCATTER_FORWARD);
    347:     VecGhostUpdateEnd(vmoab->local,INSERT_VALUES,SCATTER_FORWARD);
    348:     VecGetArray(xmoab->local, varray);
    349:   }
    350:   else {
    351:     /* Get the MOAB private data */
    352:     DMMoabGetVecTag(vec,&vtag);

    354:     /* exchange the data into ghost cells first */
    355:     merr = dmmoab->pcomm->exchange_tags(vtag,*dmmoab->vlocal);MBERRNM(merr);

    357:     PetscMalloc1((dmmoab->nloc+dmmoab->nghost)*dmmoab->numFields,varray);

    359:     /* Get the array data for local entities */
    360:     merr = dmmoab->mbiface->tag_iterate(vtag,dmmoab->vlocal->begin(),dmmoab->vlocal->end(),count,reinterpret_cast<void*&>(marray),false);MBERRNM(merr);
    361:     if (count!=dmmoab->nloc+dmmoab->nghost) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Mismatch between local vertices and tag partition for Vec. %D != %D.",count,dmmoab->nloc+dmmoab->nghost);

    363:     i=0;
    364:     for(moab::Range::iterator iter = dmmoab->vlocal->begin(); iter != dmmoab->vlocal->end(); iter++) {
    365:       for (f=0;f<dmmoab->numFields;f++,i++)
    366:         (*varray)[dmmoab->lidmap[(PetscInt)*iter]*dmmoab->numFields+f]=marray[i];
    367:     }
    368:   }
    369:   return(0);
    370: }

    375: /*@C
    376:   DMMoabVecRestoreArray - Restores the read-only direct access array obtained via DMMoabVecGetArray

    378:   Collective on MPI_Comm

    380:   Input Parameter:
    381: + dm              - The DMMoab object being set
    382: . vec             - The Vector whose underlying data is requested
    383: . array           - The local data array

    385:   Level: intermediate

    387: .keywords: MOAB, distributed array

    389: .seealso: DMMoabVecGetArrayRead(), DMMoabVecGetArray(), DMMoabVecRestoreArray()
    390: @*/
    391: PetscErrorCode  DMMoabVecRestoreArrayRead(DM dm,Vec vec,void* array)
    392: {
    393:   PetscErrorCode  ierr;
    394:   PetscScalar     **varray;
    395:   PetscContainer  moabdata;
    396:   Vec_MOAB        *vmoab,*xmoab;

    403:   /* Get the Vec_MOAB struct for the original vector */
    404:   PetscObjectQuery((PetscObject)vec,"MOABData", (PetscObject*) &moabdata);
    405:   PetscContainerGetPointer(moabdata, (void**)&vmoab);

    407:   /* Get the real scalar array handle */
    408:   varray = reinterpret_cast<PetscScalar**>(array);

    410:   if (vmoab->is_native_vec) {
    411:     /* Get the Vec_MOAB struct for the original vector */
    412:     PetscObjectQuery((PetscObject)vmoab->local,"MOABData", (PetscObject*) &moabdata);
    413:     PetscContainerGetPointer(moabdata, (void**)&xmoab);

    415:     /* restore the local representation of the arrays from Vectors */
    416:     VecRestoreArray(xmoab->local, varray);
    417:     VecGhostRestoreLocalForm(vmoab->local,&xmoab->local);

    419:     /* restore local pieces */
    420:     DMRestoreLocalVector(dm, &vmoab->local);
    421:   }
    422:   else {
    423:     /* Nothing to do but just free the memory allocated before */
    424:     PetscFree(*varray);

    426:   }
    427:   return(0);
    428: }

    433: PetscErrorCode DMCreateVector_Moab_Private(DM dm,moab::Tag tag,const moab::Range* userrange,PetscBool is_global_vec,PetscBool destroy_tag,Vec *vec)
    434: {
    435:   PetscErrorCode    ierr;
    436:   moab::ErrorCode   merr;
    437:   PetscBool         is_newtag;
    438:   const moab::Range *range;
    439:   PetscInt          count,lnative_vec,gnative_vec;
    440:   std::string       ttname;
    441:   PetscScalar       *data_ptr,*defaultvals;

    443:   Vec_MOAB *vmoab;
    444:   DM_Moab *dmmoab = (DM_Moab*)dm->data;
    445:   moab::ParallelComm *pcomm = dmmoab->pcomm;
    446:   moab::Interface *mbiface = dmmoab->mbiface;

    449:   if(sizeof(PetscReal) != sizeof(PetscScalar)) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "MOAB tags only support Real types (Complex-type unsupported)");
    450:   if(!userrange) range = dmmoab->vowned;
    451:   else range = userrange;
    452:   if(!range) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "Input range cannot be empty or call DMSetUp first.");

    454:   /* If the tag data is in a single sequence, use PETSc native vector since tag_iterate isn't useful anymore */
    455:   lnative_vec=(range->psize()-1);

    457: #if 0
    458: //  lnative_vec=1; /* NOTE: Testing PETSc vector: will force to create native vector all the time */
    459: //  lnative_vec=0; /* NOTE: Testing MOAB vector: will force to create MOAB tag_iterate based vector all the time */
    460: #endif
    461:   MPI_Allreduce(&lnative_vec, &gnative_vec, 1, MPI_INT, MPI_MAX, pcomm->comm());

    463:   /* Create the MOAB internal data object */
    464:   PetscNew(&vmoab);
    465:   vmoab->is_native_vec=(gnative_vec>0?PETSC_TRUE:PETSC_FALSE);

    467:   if (!vmoab->is_native_vec) {
    468:     merr = mbiface->tag_get_name(tag, ttname);
    469:     if (!ttname.length() && merr !=moab::MB_SUCCESS) {
    470:       /* get the new name for the anonymous MOABVec -> the tag_name will be destroyed along with Tag */
    471:       char *tag_name = PETSC_NULL;
    472:       DMVecCreateTagName_Moab_Private(pcomm,&tag_name);
    473:       is_newtag = PETSC_TRUE;

    475:       /* Create the default value for the tag (all zeros) */
    476:       PetscCalloc1(dmmoab->numFields,&defaultvals);

    478:       /* Create the tag */
    479:       merr = mbiface->tag_get_handle(tag_name,dmmoab->numFields,moab::MB_TYPE_DOUBLE,tag,
    480:                                     moab::MB_TAG_DENSE|moab::MB_TAG_CREAT,defaultvals);MBERRNM(merr);
    481:       PetscFree(tag_name);
    482:       PetscFree(defaultvals);
    483:     }
    484:     else {
    485:       /* Make sure the tag data is of type "double" */
    486:       moab::DataType tag_type;
    487:       merr = mbiface->tag_get_data_type(tag, tag_type);MBERRNM(merr);
    488:       if(tag_type != moab::MB_TYPE_DOUBLE) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Tag data type must be MB_TYPE_DOUBLE");
    489:       is_newtag = destroy_tag;
    490:     }

    492:     vmoab->tag = tag;
    493:     vmoab->new_tag = is_newtag;
    494:   }
    495:   vmoab->mbiface = mbiface;
    496:   vmoab->pcomm = pcomm;
    497:   vmoab->is_global_vec = is_global_vec;
    498:   vmoab->tag_size=dmmoab->bs;
    499:
    500:   if (vmoab->is_native_vec) {

    502:     /* Create the PETSc Vector directly and attach our functions accordingly */
    503:     if (!is_global_vec) {
    504:       /* This is an MPI Vector with ghosted padding */
    505:       VecCreateGhostBlock(pcomm->comm(),dmmoab->bs,dmmoab->numFields*dmmoab->nloc,
    506:                                  dmmoab->numFields*dmmoab->n,dmmoab->nghost,&dmmoab->gsindices[dmmoab->nloc],vec);
    507:     }
    508:     else {
    509:       /* This is an MPI/SEQ Vector */
    510:       VecCreate(pcomm->comm(),vec);
    511:       VecSetSizes(*vec,dmmoab->numFields*dmmoab->nloc,PETSC_DECIDE);
    512:       VecSetBlockSize(*vec,dmmoab->bs);
    513:       VecSetType(*vec, VECMPI);
    514:     }
    515:   }
    516:   else {
    517:     /* Call tag_iterate. This will cause MOAB to allocate memory for the
    518:        tag data if it hasn't already happened */
    519:     merr = mbiface->tag_iterate(tag,range->begin(),range->end(),count,(void*&)data_ptr);MBERRNM(merr);

    521:     /* set the reference for vector range */
    522:     vmoab->tag_range = new moab::Range(*range);
    523:     merr = mbiface->tag_get_length(tag,dmmoab->numFields);MBERRNM(merr);

    525:     /* Create the PETSc Vector
    526:       Query MOAB mesh to check if there are any ghosted entities
    527:         -> if we do, create a ghosted vector to map correctly to the same layout
    528:         -> else, create a non-ghosted parallel vector */
    529:     if (!is_global_vec) {
    530:       /* This is an MPI Vector with ghosted padding */
    531:       VecCreateGhostBlockWithArray(pcomm->comm(),dmmoab->bs,dmmoab->numFields*dmmoab->nloc,
    532:                                 dmmoab->numFields*dmmoab->n,dmmoab->nghost,&dmmoab->gsindices[dmmoab->nloc],data_ptr,vec);
    533:     }
    534:     else {
    535:       /* This is an MPI Vector without ghosted padding */
    536:       VecCreateMPIWithArray(pcomm->comm(),dmmoab->bs,dmmoab->numFields*range->size(),
    537:                                 PETSC_DECIDE,data_ptr,vec);
    538:     }
    539:   }
    540:   VecSetFromOptions(*vec);

    542:   /* create a container and store the internal MOAB data for faster access based on Entities etc */
    543:   PetscContainer moabdata;
    544:   PetscContainerCreate(PETSC_COMM_WORLD,&moabdata);
    545:   PetscContainerSetPointer(moabdata,vmoab);
    546:   PetscContainerSetUserDestroy(moabdata,DMVecUserDestroy_Moab);
    547:   PetscObjectCompose((PetscObject)*vec,"MOABData",(PetscObject)moabdata);
    548:   (*vec)->ops->duplicate = DMVecDuplicate_Moab;
    549:   PetscContainerDestroy(&moabdata);

    551:   /* Vector created, manually set local to global mapping */
    552:   if (dmmoab->ltog_map) {
    553:     VecSetLocalToGlobalMapping(*vec,dmmoab->ltog_map);
    554:   }

    556:   /* set the DM reference to the vector */
    557:   VecSetDM(*vec, dm);
    558:   return(0);
    559: }

    564: /*  DMVecCreateTagName_Moab_Private
    565:  *
    566:  *  Creates a unique tag name that will be shared across processes. If
    567:  *  pcomm is NULL, then this is a serial vector. A unique tag name
    568:  *  will be returned in tag_name in either case.
    569:  *
    570:  *  The tag names have the format _PETSC_VEC_N where N is some integer.
    571:  *
    572:  *  NOTE: The tag_name is allocated in this routine; The user needs to free
    573:  *        the character array.
    574:  */
    575: PetscErrorCode DMVecCreateTagName_Moab_Private(moab::ParallelComm *pcomm,char** tag_name)
    576: {
    577:   moab::ErrorCode mberr;
    578:   PetscErrorCode  ierr;
    579:   PetscInt        n,global_n;
    580:   moab::Tag indexTag;

    583:   const char*       PVEC_PREFIX      = "__PETSC_VEC_";
    584:   PetscMalloc(PETSC_MAX_PATH_LEN, tag_name);

    586:   /* Check to see if there are any PETSc vectors defined */
    587:   moab::Interface  *mbiface = pcomm->get_moab();
    588:   moab::EntityHandle rootset = mbiface->get_root_set();
    589:
    590:   /* Create a tag in MOAB mesh to index and keep track of number of Petsc vec tags */
    591:   mberr = mbiface->tag_get_handle("__PETSC_VECS__",1,moab::MB_TYPE_INTEGER,indexTag,
    592:                                   moab::MB_TAG_SPARSE | moab::MB_TAG_CREAT,0);MBERRNM(mberr);
    593:   mberr = mbiface->tag_get_data(indexTag, &rootset, 1, &n);
    594:   if (mberr == moab::MB_TAG_NOT_FOUND) n=0;  /* this is the first temporary vector */
    595:   else MBERRNM(mberr);

    597:   /* increment the new value of n */
    598:   ++n;

    600:   /* Make sure that n is consistent across all processes */
    601:   MPI_Allreduce(&n,&global_n,1,MPI_INT,MPI_MAX,pcomm->comm());

    603:   /* Set the new name accordingly and return */
    604:   PetscSNPrintf(*tag_name, PETSC_MAX_PATH_LEN-1, "%s_%D", PVEC_PREFIX, global_n);
    605:   mberr = mbiface->tag_set_data(indexTag, &rootset, 1, (const void*)&global_n);MBERRNM(mberr);
    606:   return(0);
    607: }

    612: PetscErrorCode DMCreateGlobalVector_Moab(DM dm,Vec *gvec)
    613: {
    614:   PetscErrorCode  ierr;
    615:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    620:   DMCreateVector_Moab_Private(dm,PETSC_NULL,dmmoab->vowned,PETSC_TRUE,PETSC_TRUE,gvec);
    621:   return(0);
    622: }

    627: PetscErrorCode DMCreateLocalVector_Moab(DM dm,Vec *lvec)
    628: {
    629:   PetscErrorCode  ierr;
    630:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    635:   DMCreateVector_Moab_Private(dm,PETSC_NULL,dmmoab->vlocal,PETSC_FALSE,PETSC_TRUE,lvec);
    636:   return(0);
    637: }

    642: PetscErrorCode DMVecDuplicate_Moab(Vec x,Vec *y)
    643: {
    645:   DM             dm;
    646:   PetscContainer  moabdata;
    647:   Vec_MOAB        *vmoab;

    653:   /* Get the Vec_MOAB struct for the original vector */
    654:   PetscObjectQuery((PetscObject)x,"MOABData", (PetscObject*) &moabdata);
    655:   PetscContainerGetPointer(moabdata, (void**)&vmoab);

    657:   VecGetDM(x, &dm);

    660:   DMCreateVector_Moab_Private(dm,PETSC_NULL,vmoab->tag_range,vmoab->is_global_vec,PETSC_TRUE,y);
    661:   VecSetDM(*y, dm);
    662:   return(0);
    663: }

    668: PetscErrorCode DMVecUserDestroy_Moab(void *user)
    669: {
    670:   Vec_MOAB        *vmoab=(Vec_MOAB*)user;
    671:   PetscErrorCode  ierr;
    672:   moab::ErrorCode merr;

    675:   if(vmoab->new_tag && vmoab->tag) {
    676:     /* Tag was created via a call to VecDuplicate, delete the underlying tag in MOAB */
    677:     merr = vmoab->mbiface->tag_delete(vmoab->tag);MBERRNM(merr);
    678:   }
    679:   delete vmoab->tag_range;
    680:   vmoab->tag = PETSC_NULL;
    681:   vmoab->mbiface = PETSC_NULL;
    682:   vmoab->pcomm = PETSC_NULL;
    683:   PetscFree(vmoab);
    684:   return(0);
    685: }

    690: PetscErrorCode  DMGlobalToLocalBegin_Moab(DM dm,Vec g,InsertMode mode,Vec l)
    691: {
    692:   PetscErrorCode    ierr;
    693:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    696:   VecScatterBegin(dmmoab->ltog_sendrecv,g,l,mode,SCATTER_REVERSE);
    697:   return(0);
    698: }

    703: PetscErrorCode  DMGlobalToLocalEnd_Moab(DM dm,Vec g,InsertMode mode,Vec l)
    704: {
    705:   PetscErrorCode    ierr;
    706:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    709:   VecScatterEnd(dmmoab->ltog_sendrecv,g,l,mode,SCATTER_REVERSE);
    710:   return(0);
    711: }

    716: PetscErrorCode  DMLocalToGlobalBegin_Moab(DM dm,Vec l,InsertMode mode,Vec g)
    717: {
    718:   PetscErrorCode    ierr;
    719:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    722:   VecScatterBegin(dmmoab->ltog_sendrecv,l,g,mode,SCATTER_FORWARD);
    723:   return(0);
    724: }

    729: PetscErrorCode  DMLocalToGlobalEnd_Moab(DM dm,Vec l,InsertMode mode,Vec g)
    730: {
    731:   PetscErrorCode    ierr;
    732:   DM_Moab         *dmmoab = (DM_Moab*)dm->data;

    735:   VecScatterEnd(dmmoab->ltog_sendrecv,l,g,mode,SCATTER_FORWARD);
    736:   return(0);
    737: }