Date: 2015-10-02T22:03:30+00:00

Actual source code: stride.c
petsc-3.6.2 2015-10-02
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      2: /*
      3:        Index sets of evenly space integers, defined by a
      4:     start, stride and length.
      5: */
      6: #include <petsc/private/isimpl.h>             /*I   "petscis.h"   I*/
      7: #include <petscvec.h>
      8: #include <petscviewer.h>

     10: typedef struct {
     11:   PetscInt N,n,first,step;
     12: } IS_Stride;

     16: PetscErrorCode ISIdentity_Stride(IS is,PetscBool  *ident)
     17: {
     18:   IS_Stride *is_stride = (IS_Stride*)is->data;

     21:   is->isidentity = PETSC_FALSE;
     22:   *ident         = PETSC_FALSE;
     23:   if (is_stride->first != 0) return(0);
     24:   if (is_stride->step  != 1) return(0);
     25:   *ident         = PETSC_TRUE;
     26:   is->isidentity = PETSC_TRUE;
     27:   return(0);
     28: }

     32: static PetscErrorCode ISCopy_Stride(IS is,IS isy)
     33: {
     34:   IS_Stride      *is_stride = (IS_Stride*)is->data,*isy_stride = (IS_Stride*)isy->data;

     38:   PetscMemcpy(isy_stride,is_stride,sizeof(IS_Stride));
     39:   return(0);
     40: }

     44: PetscErrorCode ISDuplicate_Stride(IS is,IS *newIS)
     45: {
     47:   IS_Stride      *sub = (IS_Stride*)is->data;

     50:   ISCreateStride(PetscObjectComm((PetscObject)is),sub->n,sub->first,sub->step,newIS);
     51:   return(0);
     52: }

     56: PetscErrorCode ISInvertPermutation_Stride(IS is,PetscInt nlocal,IS *perm)
     57: {
     58:   IS_Stride      *isstride = (IS_Stride*)is->data;

     62:   if (is->isidentity) {
     63:     ISCreateStride(PETSC_COMM_SELF,isstride->n,0,1,perm);
     64:   } else {
     65:     IS             tmp;
     66:     const PetscInt *indices,n = isstride->n;
     67:     ISGetIndices(is,&indices);
     68:     ISCreateGeneral(PetscObjectComm((PetscObject)is),n,indices,PETSC_COPY_VALUES,&tmp);
     69:     ISSetPermutation(tmp);
     70:     ISRestoreIndices(is,&indices);
     71:     ISInvertPermutation(tmp,nlocal,perm);
     72:     ISDestroy(&tmp);
     73:   }
     74:   return(0);
     75: }

     79: /*@
     80:    ISStrideGetInfo - Returns the first index in a stride index set and
     81:    the stride width.

     83:    Not Collective

     85:    Input Parameter:
     86: .  is - the index set

     88:    Output Parameters:
     89: .  first - the first index
     90: .  step - the stride width

     92:    Level: intermediate

     94:    Notes:
     95:    Returns info on stride index set. This is a pseudo-public function that
     96:    should not be needed by most users.

     98:    Concepts: index sets^getting information
     99:    Concepts: IS^getting information

    101: .seealso: ISCreateStride(), ISGetSize()
    102: @*/
    103: PetscErrorCode  ISStrideGetInfo(IS is,PetscInt *first,PetscInt *step)
    104: {
    105:   IS_Stride      *sub;
    106:   PetscBool      flg;

    113:   PetscObjectTypeCompare((PetscObject)is,ISSTRIDE,&flg);
    114:   if (!flg) SETERRQ(PetscObjectComm((PetscObject)is),PETSC_ERR_ARG_WRONG,"IS must be of type ISSTRIDE");

    116:   sub = (IS_Stride*)is->data;
    117:   if (first) *first = sub->first;
    118:   if (step)  *step  = sub->step;
    119:   return(0);
    120: }

    124: PetscErrorCode ISDestroy_Stride(IS is)
    125: {

    129:   PetscObjectComposeFunction((PetscObject)is,"ISStrideSetStride_C",0);
    130:   PetscFree(is->data);
    131:   return(0);
    132: }

    136: PetscErrorCode  ISToGeneral_Stride(IS inis)
    137: {
    139:   const PetscInt *idx;
    140:   PetscInt       n;

    143:   ISGetLocalSize(inis,&n);
    144:   ISGetIndices(inis,&idx);
    145:   ISSetType(inis,ISGENERAL);
    146:   ISGeneralSetIndices(inis,n,idx,PETSC_OWN_POINTER);
    147:   return(0);
    148: }

    151: /*
    152:      Returns a legitimate index memory even if
    153:    the stride index set is empty.
    154: */
    157: PetscErrorCode ISGetIndices_Stride(IS in,const PetscInt *idx[])
    158: {
    159:   IS_Stride      *sub = (IS_Stride*)in->data;
    161:   PetscInt       i,**dx = (PetscInt**)idx;

    164:   PetscMalloc1(sub->n,idx);
    165:   if (sub->n) {
    166:     (*dx)[0] = sub->first;
    167:     for (i=1; i<sub->n; i++) (*dx)[i] = (*dx)[i-1] + sub->step;
    168:   }
    169:   return(0);
    170: }

    174: PetscErrorCode ISRestoreIndices_Stride(IS in,const PetscInt *idx[])
    175: {

    179:   PetscFree(*(void**)idx);
    180:   return(0);
    181: }

    185: PetscErrorCode ISGetSize_Stride(IS is,PetscInt *size)
    186: {
    187:   IS_Stride *sub = (IS_Stride*)is->data;

    190:   *size = sub->N;
    191:   return(0);
    192: }

    196: PetscErrorCode ISGetLocalSize_Stride(IS is,PetscInt *size)
    197: {
    198:   IS_Stride *sub = (IS_Stride*)is->data;

    201:   *size = sub->n;
    202:   return(0);
    203: }

    207: PetscErrorCode ISView_Stride(IS is,PetscViewer viewer)
    208: {
    209:   IS_Stride      *sub = (IS_Stride*)is->data;
    210:   PetscInt       i,n = sub->n;
    211:   PetscMPIInt    rank,size;
    212:   PetscBool      iascii;

    216:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);
    217:   if (iascii) {
    218:     MPI_Comm_rank(PetscObjectComm((PetscObject)is),&rank);
    219:     MPI_Comm_size(PetscObjectComm((PetscObject)is),&size);
    220:     if (size == 1) {
    221:       if (is->isperm) {
    222:         PetscViewerASCIIPrintf(viewer,"Index set is permutation\n");
    223:       }
    224:       PetscViewerASCIIPrintf(viewer,"Number of indices in (stride) set %D\n",n);
    225:       for (i=0; i<n; i++) {
    226:         PetscViewerASCIIPrintf(viewer,"%D %D\n",i,sub->first + i*sub->step);
    227:       }
    228:       PetscViewerFlush(viewer);
    229:     } else {
    230:       PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);
    231:       if (is->isperm) {
    232:         PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Index set is permutation\n",rank);
    233:       }
    234:       PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of indices in (stride) set %D\n",rank,n);
    235:       for (i=0; i<n; i++) {
    236:         PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,sub->first + i*sub->step);
    237:       }
    238:       PetscViewerFlush(viewer);
    239:       PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);
    240:     }
    241:   }
    242:   return(0);
    243: }

    247: PetscErrorCode ISSort_Stride(IS is)
    248: {
    249:   IS_Stride *sub = (IS_Stride*)is->data;

    252:   if (sub->step >= 0) return(0);
    253:   sub->first += (sub->n - 1)*sub->step;
    254:   sub->step  *= -1;
    255:   return(0);
    256: }

    260: PetscErrorCode ISSorted_Stride(IS is,PetscBool * flg)
    261: {
    262:   IS_Stride *sub = (IS_Stride*)is->data;

    265:   if (sub->step >= 0) *flg = PETSC_TRUE;
    266:   else *flg = PETSC_FALSE;
    267:   return(0);
    268: }

    272: static PetscErrorCode ISOnComm_Stride(IS is,MPI_Comm comm,PetscCopyMode mode,IS *newis)
    273: {
    275:   IS_Stride      *sub = (IS_Stride*)is->data;

    278:   ISCreateStride(comm,sub->n,sub->first,sub->step,newis);
    279:   return(0);
    280: }

    284: static PetscErrorCode ISSetBlockSize_Stride(IS is,PetscInt bs)
    285: {
    286:   IS_Stride     *sub = (IS_Stride*)is->data;

    290:   if (sub->step != 1 && bs != 1) SETERRQ2(PetscObjectComm((PetscObject)is),PETSC_ERR_ARG_SIZ,"ISSTRIDE has stride %D, cannot be blocked of size %D",sub->step,bs);
    291:   PetscLayoutSetBlockSize(is->map, bs);
    292:   return(0);
    293: }

    297: static PetscErrorCode ISContiguousLocal_Stride(IS is,PetscInt gstart,PetscInt gend,PetscInt *start,PetscBool *contig)
    298: {
    299:   IS_Stride *sub = (IS_Stride*)is->data;

    302:   if (sub->step == 1 && sub->first >= gstart && sub->first+sub->n <= gend) {
    303:     *start  = sub->first - gstart;
    304:     *contig = PETSC_TRUE;
    305:   } else {
    306:     *start  = -1;
    307:     *contig = PETSC_FALSE;
    308:   }
    309:   return(0);
    310: }

    313: static struct _ISOps myops = { ISGetSize_Stride,
    314:                                ISGetLocalSize_Stride,
    315:                                ISGetIndices_Stride,
    316:                                ISRestoreIndices_Stride,
    317:                                ISInvertPermutation_Stride,
    318:                                ISSort_Stride,
    319:                                ISSort_Stride,
    320:                                ISSorted_Stride,
    321:                                ISDuplicate_Stride,
    322:                                ISDestroy_Stride,
    323:                                ISView_Stride,
    324:                                ISLoad_Default,
    325:                                ISIdentity_Stride,
    326:                                ISCopy_Stride,
    327:                                ISToGeneral_Stride,
    328:                                ISOnComm_Stride,
    329:                                ISSetBlockSize_Stride,
    330:                                ISContiguousLocal_Stride};

    335: /*@
    336:    ISStrideSetStride - Sets the stride information for a stride index set.

    338:    Collective on IS

    340:    Input Parameters:
    341: +  is - the index set
    342: .  n - the length of the locally owned portion of the index set
    343: .  first - the first element of the locally owned portion of the index set
    344: -  step - the change to the next index

    346:    Level: beginner

    348:   Concepts: IS^stride
    349:   Concepts: index sets^stride
    350:   Concepts: stride^index set

    352: .seealso: ISCreateGeneral(), ISCreateBlock(), ISAllGather()
    353: @*/
    354: PetscErrorCode  ISStrideSetStride(IS is,PetscInt n,PetscInt first,PetscInt step)
    355: {

    359:   if (n < 0) SETERRQ1(PetscObjectComm((PetscObject)is), PETSC_ERR_ARG_OUTOFRANGE, "Negative length %d not valid", n);
    360:   PetscUseMethod(is,"ISStrideSetStride_C",(IS,PetscInt,PetscInt,PetscInt),(is,n,first,step));
    361:   return(0);
    362: }

    366: PetscErrorCode  ISStrideSetStride_Stride(IS is,PetscInt n,PetscInt first,PetscInt step)
    367: {
    369:   PetscInt       min,max;
    370:   IS_Stride      *sub = (IS_Stride*)is->data;

    373:   sub->n     = n;
    374:   MPI_Allreduce(&n,&sub->N,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)is));
    375:   sub->first = first;
    376:   sub->step  = step;
    377:   if (step > 0) {min = first; max = first + step*(n-1);}
    378:   else          {max = first; min = first + step*(n-1);}

    380:   is->min  = n > 0 ? min : -1;
    381:   is->max  = n > 0 ? max : -1;
    382:   is->data = (void*)sub;

    384:   if ((!first && step == 1) || (first == max && step == -1 && !min)) is->isperm = PETSC_TRUE;
    385:   else is->isperm = PETSC_FALSE;
    386:   return(0);
    387: }

    391: /*@
    392:    ISCreateStride - Creates a data structure for an index set
    393:    containing a list of evenly spaced integers.

    395:    Collective on MPI_Comm

    397:    Input Parameters:
    398: +  comm - the MPI communicator
    399: .  n - the length of the locally owned portion of the index set
    400: .  first - the first element of the locally owned portion of the index set
    401: -  step - the change to the next index

    403:    Output Parameter:
    404: .  is - the new index set

    406:    Notes:
    407:    When the communicator is not MPI_COMM_SELF, the operations on IS are NOT
    408:    conceptually the same as MPI_Group operations. The IS are the
    409:    distributed sets of indices and thus certain operations on them are collective.

    411:    Level: beginner

    413:   Concepts: IS^stride
    414:   Concepts: index sets^stride
    415:   Concepts: stride^index set

    417: .seealso: ISCreateGeneral(), ISCreateBlock(), ISAllGather()
    418: @*/
    419: PetscErrorCode  ISCreateStride(MPI_Comm comm,PetscInt n,PetscInt first,PetscInt step,IS *is)
    420: {

    424:   ISCreate(comm,is);
    425:   ISSetType(*is,ISSTRIDE);
    426:   ISStrideSetStride(*is,n,first,step);
    427:   return(0);
    428: }

    432: PETSC_EXTERN PetscErrorCode ISCreate_Stride(IS is)
    433: {
    435:   IS_Stride      *sub;

    438:   PetscMemcpy(is->ops,&myops,sizeof(myops));
    439:   PetscNewLog(is,&sub);
    440:   is->data = sub;
    441:   PetscObjectComposeFunction((PetscObject)is,"ISStrideSetStride_C",ISStrideSetStride_Stride);
    442:   return(0);
    443: }