Date: 2015-10-02T22:12:55+00:00

Actual source code: bipartite.c
petsc-3.6.2 2015-10-02
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      1: #include <petsc/private/matimpl.h>      /*I "petscmat.h"  I*/
      2: #include <petscsf.h>

      6: PETSC_EXTERN PetscErrorCode MatColoringCreateBipartiteGraph(MatColoring mc,PetscSF *etoc,PetscSF *etor)
      7: {
      8:   PetscErrorCode    ierr;
      9:   PetscInt          nentries,ncolentries,idx;
     10:   PetscInt          i,j,rs,re,cs,ce,cn;
     11:   PetscInt          *rowleaf,*colleaf,*rowdata;
     12:   PetscInt          ncol;
     13:   const PetscScalar *vcol;
     14:   const PetscInt    *icol;
     15:   const PetscInt    *coldegrees,*rowdegrees;
     16:   Mat               m = mc->mat;

     19:   MatGetOwnershipRange(m,&rs,&re);
     20:   MatGetOwnershipRangeColumn(m,&cs,&ce);
     21:   cn = ce-cs;
     22:   nentries=0;
     23:   for (i=rs;i<re;i++) {
     24:     MatGetRow(m,i,&ncol,NULL,&vcol);
     25:     for (j=0;j<ncol;j++) {
     26:       nentries++;
     27:     }
     28:     MatRestoreRow(m,i,&ncol,NULL,&vcol);
     29:   }
     30:   PetscMalloc1(nentries,&rowleaf);
     31:   PetscMalloc1(nentries,&rowdata);
     32:   idx=0;
     33:   for (i=rs;i<re;i++) {
     34:     MatGetRow(m,i,&ncol,&icol,&vcol);
     35:     for (j=0;j<ncol;j++) {
     36:       rowleaf[idx] = icol[j];
     37:       rowdata[idx] = i;
     38:       idx++;
     39:     }
     40:     MatRestoreRow(m,i,&ncol,&icol,&vcol);
     41:   }
     42:   if (idx != nentries) SETERRQ2(PetscObjectComm((PetscObject)m),PETSC_ERR_NOT_CONVERGED,"Bad number of entries %d vs %d",idx,nentries);
     43:   PetscSFCreate(PetscObjectComm((PetscObject)m),etoc);
     44:   PetscSFCreate(PetscObjectComm((PetscObject)m),etor);

     46:   PetscSFSetGraphLayout(*etoc,m->cmap,nentries,NULL,PETSC_COPY_VALUES,rowleaf);
     47:   PetscSFSetFromOptions(*etoc);

     49:   /* determine the number of entries in the column matrix */
     50:   PetscLogEventBegin(Mat_Coloring_Comm,*etoc,0,0,0);
     51:   PetscSFComputeDegreeBegin(*etoc,&coldegrees);
     52:   PetscSFComputeDegreeEnd(*etoc,&coldegrees);
     53:   PetscLogEventEnd(Mat_Coloring_Comm,*etoc,0,0,0);
     54:   ncolentries=0;
     55:   for (i=0;i<cn;i++) {
     56:     ncolentries += coldegrees[i];
     57:   }
     58:   PetscMalloc1(ncolentries,&colleaf);

     60:   /* create the one going the other way by building the leaf set */
     61:   PetscLogEventBegin(Mat_Coloring_Comm,*etoc,0,0,0);
     62:   PetscSFGatherBegin(*etoc,MPIU_INT,rowdata,colleaf);
     63:   PetscSFGatherEnd(*etoc,MPIU_INT,rowdata,colleaf);
     64:   PetscLogEventEnd(Mat_Coloring_Comm,*etoc,0,0,0);

     66:   /* this one takes mat entries in *columns* to rows -- you never have to actually be able to order the leaf entries. */
     67:   PetscSFSetGraphLayout(*etor,m->rmap,ncolentries,NULL,PETSC_COPY_VALUES,colleaf);
     68:   PetscSFSetFromOptions(*etor);

     70:   PetscLogEventBegin(Mat_Coloring_Comm,*etor,0,0,0);
     71:   PetscSFComputeDegreeBegin(*etor,&rowdegrees);
     72:   PetscSFComputeDegreeEnd(*etor,&rowdegrees);
     73:   PetscLogEventEnd(Mat_Coloring_Comm,*etor,0,0,0);

     75:   PetscFree(rowdata);
     76:   PetscFree(rowleaf);
     77:   PetscFree(colleaf);
     78:   return(0);
     79: }