Date: 2015-10-02T22:09:09+00:00

Actual source code: mpibstream.c
petsc-3.6.2 2015-10-02
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      1: #define PETSCMAT_DLL

      3: #include <../src/mat/impls/baij/mpi/mpibaij.h>
      4: #include <../src/mat/impls/baij/seq/bstream/bstream.h>

      6: extern PetscErrorCode MatMult_SeqBSTRM_4(Mat,Vec,Vec);
      7: extern PetscErrorCode MatMult_SeqBSTRM_5(Mat,Vec,Vec);
      8: extern PetscErrorCode MatMultAdd_SeqBSTRM_4(Mat,Vec,Vec,Vec);
      9: extern PetscErrorCode MatMultAdd_SeqBSTRM_5(Mat,Vec,Vec,Vec);
     10: extern PetscErrorCode MatSOR_SeqBSTRM_4(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);
     11: extern PetscErrorCode MatSOR_SeqBSTRM_5(Mat,Vec,PetscReal,MatSORType,PetscReal,PetscInt,PetscInt,Vec);

     16: PetscErrorCode MatMPIBSTRM_create_bstrm(Mat A)
     17: {
     18:   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*)A->data;
     19:   Mat_SeqBAIJ *Aij = (Mat_SeqBAIJ*)(a->A->data), *Bij = (Mat_SeqBAIJ*)(a->B->data);
     20:   /* */
     21:   Mat_SeqBSTRM *bstrmA, *bstrmB;
     22:   PetscInt     MROW = Aij->mbs, bs = a->A->rmap->bs;
     23:   PetscInt     *ai  = Aij->i, *bi = Bij->i;
     24:   PetscInt     i,j,k;
     25:   PetscScalar  *aa = Aij->a,*ba = Bij->a;

     27:   PetscInt       bs2,  rbs, cbs, slen, blen;
     29:   PetscScalar    **asp;
     30:   PetscScalar    **bsp;

     33:   rbs  = cbs = bs;
     34:   bs2  = bs*bs;
     35:   blen = ai[MROW]-ai[0];
     36:   slen = blen*bs;

     38:   PetscNewLog(a->A,&bstrmA);
     39:   a->A->spptr = (void*) bstrmA;
     40:   bstrmA      = (Mat_SeqBSTRM*) a->A->spptr;
     41:   bstrmA->rbs = bstrmA->cbs = bs;
     42:   PetscMalloc1(bs2*blen, &bstrmA->as);

     44:   PetscMalloc1(rbs, &asp);

     46:   for (i=0; i<rbs; i++) asp[i] = bstrmA->as + i*slen;

     48:   for (k=0; k<blen; k++) {
     49:     for (j=0; j<cbs; j++) {
     50:       for (i=0; i<rbs; i++) asp[i][k*cbs+j] = aa[k*bs2+j*rbs+i];
     51:     }
     52:   }

     54:   switch (bs) {
     55:   case 4:
     56:     a->A->ops->mult = MatMult_SeqBSTRM_4;
     57:     a->A->ops->sor  = MatSOR_SeqBSTRM_4;
     58:     break;
     59:   case 5:
     60:     a->A->ops->mult = MatMult_SeqBSTRM_5;
     61:     a->A->ops->sor  = MatSOR_SeqBSTRM_5;
     62:     break;
     63:   default:
     64:     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"not supported for block size %D yet",bs);
     65:   }
     66:   PetscFree(asp);

     68: /*.....*/
     69:   blen = bi[MROW]-bi[0];
     70:   slen = blen*bs;
     71:   PetscNewLog(a->B,&bstrmB);

     73:   a->B->spptr = (void*) bstrmB;
     74:   bstrmB      = (Mat_SeqBSTRM*) a->B->spptr;
     75:   bstrmB->rbs = bstrmB->cbs = bs;

     77:   PetscMalloc1(bs2*blen, &bstrmB->as);
     78:   PetscMalloc1(rbs, &bsp);

     80:   for (i=0; i<rbs; i++) bsp[i] = bstrmB->as + i*slen;

     82:   for (k=0; k<blen; k++) {
     83:     for (j=0; j<cbs; j++) {
     84:       for (i=0; i<rbs; i++) bsp[i][k*cbs+j] = ba[k*bs2+j*rbs+i];
     85:     }
     86:   }

     88:   switch (bs) {
     89:   case 4:
     90:     a->B->ops->multadd = MatMultAdd_SeqBSTRM_4;
     91:     break;
     92:   case 5:
     93:     a->B->ops->multadd = MatMultAdd_SeqBSTRM_5;
     94:     break;
     95:   default:
     96:     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"not supported for block size %D yet",bs);
     97:   }
     98:   PetscFree(bsp);
     99:   return(0);
    100: }

    102: extern PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat,MatAssemblyType);

    106: PetscErrorCode MatAssemblyEnd_MPIBSTRM(Mat A, MatAssemblyType mode)
    107: {

    111:   /*
    112:     Aij->inode.use = PETSC_FALSE;
    113:     Bij->inode.use = PETSC_FALSE;
    114:   */
    115:   MatAssemblyEnd_MPIBAIJ(A,mode);
    116:   if (mode == MAT_FLUSH_ASSEMBLY) return(0);

    118:   /* Now calculate the permutation and grouping information. */
    119:   MatMPIBSTRM_create_bstrm(A);
    120:   return(0);
    121: }

    126: PetscErrorCode MatCreateMPIBSTRM(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
    127: {
    129:   PetscMPIInt    size;

    132:   MatCreate(comm,A);
    133:   MatSetSizes(*A,m,n,M,N);
    134:   MPI_Comm_size(comm,&size);
    135:   if (size > 1) {
    136:     MatSetType(*A,MATMPIBSTRM);
    137:     MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);
    138:   } else {
    139:     MatSetType(*A,MATSEQBSTRM);
    140:     MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);
    141:   }
    142:   return(0);
    143: }

    145: PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat,MatType,MatReuse,Mat*);
    146: extern PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat,PetscInt,PetscInt,const PetscInt *,PetscInt,const PetscInt *);

    150: PetscErrorCode MatMPIBAIJSetPreallocation_MPIBSTRM(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
    151: {

    155:   MatMPIBAIJSetPreallocation_MPIBAIJ(B,bs,d_nz,d_nnz,o_nz,o_nnz);
    156:   return(0);
    157: }

    161: PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat A,MatType type,MatReuse reuse,Mat *newmat)
    162: {
    164:   Mat            B = *newmat;
    165:   Mat_SeqBSTRM   *bstrm;

    168:   if (reuse == MAT_INITIAL_MATRIX) {
    169:     MatDuplicate(A,MAT_COPY_VALUES,&B);
    170:   }

    172:   PetscNewLog(B,&bstrm);
    173:   B->spptr = (void*) bstrm;

    175:   /* Set function pointers for methods that we inherit from AIJ but override.
    176:      B->ops->duplicate   = MatDuplicate_BSTRM;
    177:      B->ops->mult        = MatMult_BSTRM;
    178:      B->ops->destroy     = MatDestroy_MPIBSTRM;
    179:   */
    180:   B->ops->assemblyend = MatAssemblyEnd_MPIBSTRM;

    182:   /* If A has already been assembled, compute the permutation. */
    183:   if (A->assembled) {
    184:     MatMPIBSTRM_create_bstrm(B);
    185:   }

    187:   PetscObjectChangeTypeName((PetscObject) B, MATMPIBSTRM);
    188:   PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBSTRM);
    189:   *newmat = B;
    190:   return(0);
    191: }

    195: PETSC_EXTERN PetscErrorCode MatCreate_MPIBSTRM(Mat A)
    196: {

    200:   MatSetType(A,MATMPIBAIJ);
    201:   MatConvert_MPIBAIJ_MPIBSTRM(A,MATMPIBSTRM,MAT_REUSE_MATRIX,&A);
    202:   return(0);
    203: }

    207: PETSC_EXTERN PetscErrorCode MatCreate_BSTRM(Mat A)
    208: {
    210:   PetscMPIInt    size;

    213:   MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);
    214:   if (size == 1) {
    215:     MatSetType(A,MATSEQBSTRM);
    216:   } else {
    217:     MatSetType(A,MATMPIBSTRM);
    218:   }
    219:   return(0);
    220: }