Date: 2015-10-02T22:03:32+00:00

Actual source code: block.c
petsc-3.6.2 2015-10-02
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      2: /*
      3:      Provides the functions for index sets (IS) defined by a list of integers.
      4:    These are for blocks of data, each block is indicated with a single integer.
      5: */
      6: #include <petsc/private/isimpl.h>               /*I  "petscis.h"     I*/
      7: #include <petscvec.h>
      8: #include <petscviewer.h>

     10: typedef struct {
     11:   PetscBool sorted;             /* are the blocks sorted? */
     12:   PetscBool borrowed_indices;   /* do not free indices when IS is destroyed */
     13:   PetscInt  *idx;
     14: } IS_Block;

     18: PetscErrorCode ISDestroy_Block(IS is)
     19: {
     20:   IS_Block       *is_block = (IS_Block*)is->data;

     24:   if (!is_block->borrowed_indices) {
     25:     PetscFree(is_block->idx);
     26:   }
     27:   PetscObjectComposeFunction((PetscObject)is,"ISBlockSetIndices_C",0);
     28:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetIndices_C",0);
     29:   PetscObjectComposeFunction((PetscObject)is,"ISBlockRestoreIndices_C",0);
     30:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetSize_C",0);
     31:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetLocalSize_C",0);
     32:   PetscFree(is->data);
     33:   return(0);
     34: }

     38: PetscErrorCode ISGetIndices_Block(IS in,const PetscInt *idx[])
     39: {
     40:   IS_Block       *sub = (IS_Block*)in->data;
     42:   PetscInt       i,j,k,bs,n,*ii,*jj;

     45:   PetscLayoutGetBlockSize(in->map, &bs);
     46:   PetscLayoutGetLocalSize(in->map, &n);
     47:   n   /= bs;
     48:   if (bs == 1) *idx = sub->idx;
     49:   else {
     50:     PetscMalloc1(bs*n,&jj);
     51:     *idx = jj;
     52:     k    = 0;
     53:     ii   = sub->idx;
     54:     for (i=0; i<n; i++)
     55:       for (j=0; j<bs; j++)
     56:         jj[k++] = bs*ii[i] + j;
     57:   }
     58:   return(0);
     59: }

     63: PetscErrorCode ISRestoreIndices_Block(IS is,const PetscInt *idx[])
     64: {
     65:   IS_Block       *sub = (IS_Block*)is->data;
     66:   PetscInt       bs;

     70:   PetscLayoutGetBlockSize(is->map, &bs);
     71:   if (bs != 1) {
     72:     PetscFree(*(void**)idx);
     73:   } else {
     74:     if (*idx != sub->idx) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Must restore with value from ISGetIndices()");
     75:   }
     76:   return(0);
     77: }

     81: PetscErrorCode ISGetSize_Block(IS is,PetscInt *size)
     82: {

     86:   PetscLayoutGetSize(is->map, size);
     87:   return(0);
     88: }

     92: PetscErrorCode ISGetLocalSize_Block(IS is,PetscInt *size)
     93: {

     97:   PetscLayoutGetLocalSize(is->map, size);
     98:   return(0);
     99: }

    103: PetscErrorCode ISInvertPermutation_Block(IS is,PetscInt nlocal,IS *isout)
    104: {
    105:   IS_Block       *sub = (IS_Block*)is->data;
    106:   PetscInt       i,*ii,bs,n,*idx = sub->idx;
    107:   PetscMPIInt    size;

    111:   MPI_Comm_size(PetscObjectComm((PetscObject)is),&size);
    112:   PetscLayoutGetBlockSize(is->map, &bs);
    113:   PetscLayoutGetLocalSize(is->map, &n);
    114:   n   /= bs;
    115:   if (size == 1) {
    116:     PetscMalloc1(n,&ii);
    117:     for (i=0; i<n; i++) ii[idx[i]] = i;
    118:     ISCreateBlock(PETSC_COMM_SELF,bs,n,ii,PETSC_OWN_POINTER,isout);
    119:     ISSetPermutation(*isout);
    120:   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No inversion written yet for block IS");
    121:   return(0);
    122: }

    126: PetscErrorCode ISView_Block(IS is, PetscViewer viewer)
    127: {
    128:   IS_Block       *sub = (IS_Block*)is->data;
    130:   PetscInt       i,bs,n,*idx = sub->idx;
    131:   PetscBool      iascii;

    134:   PetscLayoutGetBlockSize(is->map, &bs);
    135:   PetscLayoutGetLocalSize(is->map, &n);
    136:   n   /= bs;
    137:   PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);
    138:   if (iascii) {
    139:     PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);
    140:     if (is->isperm) {
    141:       PetscViewerASCIISynchronizedPrintf(viewer,"Block Index set is permutation\n");
    142:     }
    143:     PetscViewerASCIISynchronizedPrintf(viewer,"Block size %D\n",bs);
    144:     PetscViewerASCIISynchronizedPrintf(viewer,"Number of block indices in set %D\n",n);
    145:     PetscViewerASCIISynchronizedPrintf(viewer,"The first indices of each block are\n");
    146:     for (i=0; i<n; i++) {
    147:       PetscViewerASCIISynchronizedPrintf(viewer,"Block %D Index %D\n",i,idx[i]);
    148:     }
    149:     PetscViewerFlush(viewer);
    150:     PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);
    151:   }
    152:   return(0);
    153: }

    157: PetscErrorCode ISSort_Block(IS is)
    158: {
    159:   IS_Block       *sub = (IS_Block*)is->data;
    160:   PetscInt       bs, n;

    164:   if (sub->sorted) return(0);
    165:   PetscLayoutGetBlockSize(is->map, &bs);
    166:   PetscLayoutGetLocalSize(is->map, &n);
    167:   PetscSortInt(n/bs,sub->idx);
    168:   sub->sorted = PETSC_TRUE;
    169:   return(0);
    170: }

    174: PetscErrorCode ISSortRemoveDups_Block(IS is)
    175: {
    176:   IS_Block       *sub = (IS_Block*)is->data;
    177:   PetscInt       bs, n, nb;

    181:   if (sub->sorted) return(0);
    182:   PetscLayoutGetBlockSize(is->map, &bs);
    183:   PetscLayoutGetLocalSize(is->map, &n);
    184:   nb   = n/bs;
    185:   PetscSortRemoveDupsInt(&nb,sub->idx);
    186:   PetscLayoutSetLocalSize(is->map, nb*bs);
    187:   sub->sorted = PETSC_TRUE;
    188:   return(0);
    189: }

    193: PetscErrorCode ISSorted_Block(IS is,PetscBool  *flg)
    194: {
    195:   IS_Block *sub = (IS_Block*)is->data;

    198:   *flg = sub->sorted;
    199:   return(0);
    200: }

    204: PetscErrorCode ISDuplicate_Block(IS is,IS *newIS)
    205: {
    207:   IS_Block       *sub = (IS_Block*)is->data;
    208:   PetscInt        bs, n;

    211:   PetscLayoutGetBlockSize(is->map, &bs);
    212:   PetscLayoutGetLocalSize(is->map, &n);
    213:   n   /= bs;
    214:   ISCreateBlock(PetscObjectComm((PetscObject)is),bs,n,sub->idx,PETSC_COPY_VALUES,newIS);
    215:   return(0);
    216: }

    220: PetscErrorCode ISIdentity_Block(IS is,PetscBool  *ident)
    221: {
    222:   IS_Block      *is_block = (IS_Block*)is->data;
    223:   PetscInt       i,bs,n,*idx = is_block->idx;

    227:   PetscLayoutGetBlockSize(is->map, &bs);
    228:   PetscLayoutGetLocalSize(is->map, &n);
    229:   n   /= bs;
    230:   is->isidentity = PETSC_TRUE;
    231:   *ident         = PETSC_TRUE;
    232:   for (i=0; i<n; i++) {
    233:     if (idx[i] != i) {
    234:       is->isidentity = PETSC_FALSE;
    235:       *ident         = PETSC_FALSE;
    236:       return(0);
    237:     }
    238:   }
    239:   return(0);
    240: }

    244: static PetscErrorCode ISCopy_Block(IS is,IS isy)
    245: {
    246:   IS_Block       *is_block = (IS_Block*)is->data,*isy_block = (IS_Block*)isy->data;
    247:   PetscInt       bs, n, N, bsy, ny, Ny;

    251:   PetscLayoutGetBlockSize(is->map, &bs);
    252:   PetscLayoutGetLocalSize(is->map, &n);
    253:   PetscLayoutGetSize(is->map, &N);
    254:   PetscLayoutGetBlockSize(isy->map, &bsy);
    255:   PetscLayoutGetLocalSize(isy->map, &ny);
    256:   PetscLayoutGetSize(isy->map, &Ny);
    257:   if (n != ny || N != Ny || bs != bsy) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Index sets incompatible");
    258:   isy_block->sorted = is_block->sorted;
    259:   PetscMemcpy(isy_block->idx,is_block->idx,(n/bs)*sizeof(PetscInt));
    260:   return(0);
    261: }

    265: static PetscErrorCode ISOnComm_Block(IS is,MPI_Comm comm,PetscCopyMode mode,IS *newis)
    266: {
    268:   IS_Block       *sub = (IS_Block*)is->data;
    269:   PetscInt       bs, n;

    272:   if (mode == PETSC_OWN_POINTER) SETERRQ(comm,PETSC_ERR_ARG_WRONG,"Cannot use PETSC_OWN_POINTER");
    273:   PetscLayoutGetBlockSize(is->map, &bs);
    274:   PetscLayoutGetLocalSize(is->map, &n);
    275:   ISCreateBlock(comm,bs,n/bs,sub->idx,mode,newis);
    276:   return(0);
    277: }

    281: static PetscErrorCode ISSetBlockSize_Block(IS is,PetscInt bs)
    282: {

    286:   PetscLayoutSetBlockSize(is->map, bs);
    287:   return(0);
    288: }

    292: static PetscErrorCode ISToGeneral_Block(IS inis)
    293: {
    294:   IS_Block       *sub   = (IS_Block*)inis->data;
    295:   PetscInt       bs,n;
    296:   const PetscInt *idx;

    300:   ISGetBlockSize(inis,&bs);
    301:   ISGetLocalSize(inis,&n);
    302:   ISGetIndices(inis,&idx);
    303:   if (bs == 1) {
    304:     PetscCopyMode mode = sub->borrowed_indices ? PETSC_USE_POINTER : PETSC_OWN_POINTER;
    305:     sub->borrowed_indices = PETSC_TRUE; /* prevent deallocation when changing the subtype*/
    306:     ISSetType(inis,ISGENERAL);
    307:     ISGeneralSetIndices(inis,n,idx,mode);
    308:   } else {
    309:     ISSetType(inis,ISGENERAL);
    310:     ISGeneralSetIndices(inis,n,idx,PETSC_OWN_POINTER);
    311:   }
    312:   return(0);
    313: }

    316: static struct _ISOps myops = { ISGetSize_Block,
    317:                                ISGetLocalSize_Block,
    318:                                ISGetIndices_Block,
    319:                                ISRestoreIndices_Block,
    320:                                ISInvertPermutation_Block,
    321:                                ISSort_Block,
    322:                                ISSortRemoveDups_Block,
    323:                                ISSorted_Block,
    324:                                ISDuplicate_Block,
    325:                                ISDestroy_Block,
    326:                                ISView_Block,
    327:                                ISLoad_Default,
    328:                                ISIdentity_Block,
    329:                                ISCopy_Block,
    330:                                ISToGeneral_Block,
    331:                                ISOnComm_Block,
    332:                                ISSetBlockSize_Block,
    333:                                0};

    337: /*@
    338:    ISBlockSetIndices - The indices are relative to entries, not blocks.

    340:    Collective on IS

    342:    Input Parameters:
    343: +  is - the index set
    344: .  bs - number of elements in each block, one for each block and count of block not indices
    345: .   n - the length of the index set (the number of blocks)
    346: .  idx - the list of integers, these are by block, not by location
    347: +  mode - see PetscCopyMode, only PETSC_COPY_VALUES and PETSC_OWN_POINTER are supported

    350:    Notes:
    351:    When the communicator is not MPI_COMM_SELF, the operations on the
    352:    index sets, IS, are NOT conceptually the same as MPI_Group operations.
    353:    The index sets are then distributed sets of indices and thus certain operations
    354:    on them are collective.

    356:    Example:
    357:    If you wish to index the values {0,1,4,5}, then use
    358:    a block size of 2 and idx of {0,2}.

    360:    Level: beginner

    362:   Concepts: IS^block
    363:   Concepts: index sets^block
    364:   Concepts: block^index set

    366: .seealso: ISCreateStride(), ISCreateGeneral(), ISAllGather()
    367: @*/
    368: PetscErrorCode  ISBlockSetIndices(IS is,PetscInt bs,PetscInt n,const PetscInt idx[],PetscCopyMode mode)
    369: {

    373:   PetscUseMethod(is,"ISBlockSetIndices_C",(IS,PetscInt,PetscInt,const PetscInt[],PetscCopyMode),(is,bs,n,idx,mode));
    374:   return(0);
    375: }

    379: PetscErrorCode  ISBlockSetIndices_Block(IS is,PetscInt bs,PetscInt n,const PetscInt idx[],PetscCopyMode mode)
    380: {
    382:   PetscInt       i,min,max;
    383:   IS_Block       *sub   = (IS_Block*)is->data;
    384:   PetscBool      sorted = PETSC_TRUE;

    387:   if (!sub->borrowed_indices) {
    388:     PetscFree(sub->idx);
    389:   } else {
    390:     sub->borrowed_indices = PETSC_FALSE;
    391:   }
    392:   PetscLayoutSetLocalSize(is->map, n*bs);
    393:   PetscLayoutSetBlockSize(is->map, bs);
    394:   PetscLayoutSetUp(is->map);
    395:   for (i=1; i<n; i++) {
    396:     if (idx[i] < idx[i-1]) {sorted = PETSC_FALSE; break;}
    397:   }
    398:   if (n) min = max = idx[0];
    399:   else   min = max = 0;
    400:   for (i=1; i<n; i++) {
    401:     if (idx[i] < min) min = idx[i];
    402:     if (idx[i] > max) max = idx[i];
    403:   }
    404:   if (mode == PETSC_COPY_VALUES) {
    405:     PetscMalloc1(n,&sub->idx);
    406:     PetscLogObjectMemory((PetscObject)is,n*sizeof(PetscInt));
    407:     PetscMemcpy(sub->idx,idx,n*sizeof(PetscInt));
    408:   } else if (mode == PETSC_OWN_POINTER) {
    409:     sub->idx = (PetscInt*) idx;
    410:     PetscLogObjectMemory((PetscObject)is,n*sizeof(PetscInt));
    411:   } else if (mode == PETSC_USE_POINTER) {
    412:     sub->idx = (PetscInt*) idx;
    413:     sub->borrowed_indices = PETSC_TRUE;
    414:   }

    416:   sub->sorted = sorted;
    417:   is->min     = bs*min;
    418:   is->max     = bs*max+bs-1;
    419:   is->data    = (void*)sub;
    420:   PetscMemcpy(is->ops,&myops,sizeof(myops));
    421:   is->isperm  = PETSC_FALSE;
    422:   return(0);
    423: }

    427: /*@
    428:    ISCreateBlock - Creates a data structure for an index set containing
    429:    a list of integers. The indices are relative to entries, not blocks.

    431:    Collective on MPI_Comm

    433:    Input Parameters:
    434: +  comm - the MPI communicator
    435: .  bs - number of elements in each block
    436: .  n - the length of the index set (the number of blocks)
    437: .  idx - the list of integers, one for each block and count of block not indices
    438: -  mode - see PetscCopyMode, only PETSC_COPY_VALUES and PETSC_OWN_POINTER are supported in this routine

    440:    Output Parameter:
    441: .  is - the new index set

    443:    Notes:
    444:    When the communicator is not MPI_COMM_SELF, the operations on the
    445:    index sets, IS, are NOT conceptually the same as MPI_Group operations.
    446:    The index sets are then distributed sets of indices and thus certain operations
    447:    on them are collective.

    449:    Example:
    450:    If you wish to index the values {0,1,6,7}, then use
    451:    a block size of 2 and idx of {0,3}.

    453:    Level: beginner

    455:   Concepts: IS^block
    456:   Concepts: index sets^block
    457:   Concepts: block^index set

    459: .seealso: ISCreateStride(), ISCreateGeneral(), ISAllGather()
    460: @*/
    461: PetscErrorCode  ISCreateBlock(MPI_Comm comm,PetscInt bs,PetscInt n,const PetscInt idx[],PetscCopyMode mode,IS *is)
    462: {

    467:   if (n < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"length < 0");

    470:   ISCreate(comm,is);
    471:   ISSetType(*is,ISBLOCK);
    472:   ISBlockSetIndices(*is,bs,n,idx,mode);
    473:   return(0);
    474: }

    478: PetscErrorCode  ISBlockGetIndices_Block(IS is,const PetscInt *idx[])
    479: {
    480:   IS_Block *sub = (IS_Block*)is->data;

    483:   *idx = sub->idx;
    484:   return(0);
    485: }

    489: PetscErrorCode  ISBlockRestoreIndices_Block(IS is,const PetscInt *idx[])
    490: {
    492:   return(0);
    493: }

    497: /*@C
    498:    ISBlockGetIndices - Gets the indices associated with each block.

    500:    Not Collective

    502:    Input Parameter:
    503: .  is - the index set

    505:    Output Parameter:
    506: .  idx - the integer indices, one for each block and count of block not indices

    508:    Level: intermediate

    510:    Concepts: IS^block
    511:    Concepts: index sets^getting indices
    512:    Concepts: index sets^block

    514: .seealso: ISGetIndices(), ISBlockRestoreIndices()
    515: @*/
    516: PetscErrorCode  ISBlockGetIndices(IS is,const PetscInt *idx[])
    517: {

    521:   PetscUseMethod(is,"ISBlockGetIndices_C",(IS,const PetscInt*[]),(is,idx));
    522:   return(0);
    523: }

    527: /*@C
    528:    ISBlockRestoreIndices - Restores the indices associated with each block.

    530:    Not Collective

    532:    Input Parameter:
    533: .  is - the index set

    535:    Output Parameter:
    536: .  idx - the integer indices

    538:    Level: intermediate

    540:    Concepts: IS^block
    541:    Concepts: index sets^getting indices
    542:    Concepts: index sets^block

    544: .seealso: ISRestoreIndices(), ISBlockGetIndices()
    545: @*/
    546: PetscErrorCode  ISBlockRestoreIndices(IS is,const PetscInt *idx[])
    547: {

    551:   PetscUseMethod(is,"ISBlockRestoreIndices_C",(IS,const PetscInt*[]),(is,idx));
    552:   return(0);
    553: }

    557: /*@
    558:    ISBlockGetLocalSize - Returns the local number of blocks in the index set.

    560:    Not Collective

    562:    Input Parameter:
    563: .  is - the index set

    565:    Output Parameter:
    566: .  size - the local number of blocks

    568:    Level: intermediate

    570:    Concepts: IS^block sizes
    571:    Concepts: index sets^block sizes

    573: .seealso: ISGetBlockSize(), ISBlockGetSize(), ISGetSize(), ISCreateBlock()
    574: @*/
    575: PetscErrorCode  ISBlockGetLocalSize(IS is,PetscInt *size)
    576: {

    580:   PetscUseMethod(is,"ISBlockGetLocalSize_C",(IS,PetscInt*),(is,size));
    581:   return(0);
    582: }

    586: PetscErrorCode  ISBlockGetLocalSize_Block(IS is,PetscInt *size)
    587: {
    588:   PetscInt       bs, n;

    592:   PetscLayoutGetBlockSize(is->map, &bs);
    593:   PetscLayoutGetLocalSize(is->map, &n);
    594:   *size = n/bs;
    595:   return(0);
    596: }

    600: /*@
    601:    ISBlockGetSize - Returns the global number of blocks in the index set.

    603:    Not Collective

    605:    Input Parameter:
    606: .  is - the index set

    608:    Output Parameter:
    609: .  size - the global number of blocks

    611:    Level: intermediate

    613:    Concepts: IS^block sizes
    614:    Concepts: index sets^block sizes

    616: .seealso: ISGetBlockSize(), ISBlockGetLocalSize(), ISGetSize(), ISCreateBlock()
    617: @*/
    618: PetscErrorCode  ISBlockGetSize(IS is,PetscInt *size)
    619: {

    623:   PetscUseMethod(is,"ISBlockGetSize_C",(IS,PetscInt*),(is,size));
    624:   return(0);
    625: }

    629: PetscErrorCode  ISBlockGetSize_Block(IS is,PetscInt *size)
    630: {
    631:   PetscInt       bs, N;

    635:   PetscLayoutGetBlockSize(is->map, &bs);
    636:   PetscLayoutGetSize(is->map, &N);
    637:   *size = N/bs;
    638:   return(0);
    639: }

    643: PETSC_EXTERN PetscErrorCode ISCreate_Block(IS is)
    644: {
    646:   IS_Block       *sub;

    649:   PetscNewLog(is,&sub);
    650:   is->data = sub;
    651:   PetscObjectComposeFunction((PetscObject)is,"ISBlockSetIndices_C",ISBlockSetIndices_Block);
    652:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetIndices_C",ISBlockGetIndices_Block);
    653:   PetscObjectComposeFunction((PetscObject)is,"ISBlockRestoreIndices_C",ISBlockRestoreIndices_Block);
    654:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetSize_C",ISBlockGetSize_Block);
    655:   PetscObjectComposeFunction((PetscObject)is,"ISBlockGetLocalSize_C",ISBlockGetLocalSize_Block);
    656:   return(0);
    657: }