Date: 2015-10-02T22:09:52+00:00

Actual source code: sbaijfact3.c
petsc-3.6.2 2015-10-02
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      2: #include <../src/mat/impls/sbaij/seq/sbaij.h>
      3: #include <petsc/private/kernels/blockinvert.h>

      5: /* Version for when blocks are 3 by 3  */
      8: PetscErrorCode MatCholeskyFactorNumeric_SeqSBAIJ_3(Mat C,Mat A,const MatFactorInfo *info)
      9: {
     10:   Mat_SeqSBAIJ   *a   = (Mat_SeqSBAIJ*)A->data,*b = (Mat_SeqSBAIJ*)C->data;
     11:   IS             perm = b->row;
     13:   const PetscInt *ai,*aj,*perm_ptr,mbs=a->mbs,*bi=b->i,*bj=b->j;
     14:   PetscInt       *a2anew,i,j,k,k1,jmin,jmax,*jl,*il,vj,nexti,ili;
     15:   MatScalar      *ba = b->a,*aa,*ap,*dk,*uik;
     16:   MatScalar      *u,*diag,*rtmp,*rtmp_ptr;
     17:   PetscReal      shift = info->shiftamount;

     20:   /* initialization */
     21:   PetscCalloc1(9*mbs,&rtmp);
     22:   PetscMalloc2(mbs,&il,mbs,&jl);
     23:   for (i=0; i<mbs; i++) {
     24:     jl[i] = mbs; il[0] = 0;
     25:   }
     26:   PetscMalloc2(9,&dk,9,&uik);
     27:   ISGetIndices(perm,&perm_ptr);

     29:   /* check permutation */
     30:   if (!a->permute) {
     31:     ai = a->i; aj = a->j; aa = a->a;
     32:   } else {
     33:     ai   = a->inew; aj = a->jnew;
     34:     PetscMalloc1(9*ai[mbs],&aa);
     35:     PetscMemcpy(aa,a->a,9*ai[mbs]*sizeof(MatScalar));
     36:     PetscMalloc1(ai[mbs],&a2anew);
     37:     PetscMemcpy(a2anew,a->a2anew,(ai[mbs])*sizeof(PetscInt));

     39:     for (i=0; i<mbs; i++) {
     40:       jmin = ai[i]; jmax = ai[i+1];
     41:       for (j=jmin; j<jmax; j++) {
     42:         while (a2anew[j] != j) {
     43:           k = a2anew[j]; a2anew[j] = a2anew[k]; a2anew[k] = k;
     44:           for (k1=0; k1<9; k1++) {
     45:             dk[k1]     = aa[k*9+k1];
     46:             aa[k*9+k1] = aa[j*9+k1];
     47:             aa[j*9+k1] = dk[k1];
     48:           }
     49:         }
     50:         /* transform columnoriented blocks that lie in the lower triangle to roworiented blocks */
     51:         if (i > aj[j]) {
     52:           /* printf("change orientation, row: %d, col: %d\n",i,aj[j]); */
     53:           ap = aa + j*9;                     /* ptr to the beginning of j-th block of aa */
     54:           for (k=0; k<9; k++) dk[k] = ap[k]; /* dk <- j-th block of aa */
     55:           for (k=0; k<3; k++) {               /* j-th block of aa <- dk^T */
     56:             for (k1=0; k1<3; k1++) *ap++ = dk[k + 3*k1];
     57:           }
     58:         }
     59:       }
     60:     }
     61:     PetscFree(a2anew);
     62:   }

     64:   /* for each row k */
     65:   for (k = 0; k<mbs; k++) {

     67:     /*initialize k-th row with elements nonzero in row perm(k) of A */
     68:     jmin = ai[perm_ptr[k]]; jmax = ai[perm_ptr[k]+1];
     69:     if (jmin < jmax) {
     70:       ap = aa + jmin*9;
     71:       for (j = jmin; j < jmax; j++) {
     72:         vj       = perm_ptr[aj[j]];   /* block col. index */
     73:         rtmp_ptr = rtmp + vj*9;
     74:         for (i=0; i<9; i++) *rtmp_ptr++ = *ap++;
     75:       }
     76:     }

     78:     /* modify k-th row by adding in those rows i with U(i,k) != 0 */
     79:     PetscMemcpy(dk,rtmp+k*9,9*sizeof(MatScalar));
     80:     i    = jl[k]; /* first row to be added to k_th row  */

     82:     while (i < mbs) {
     83:       nexti = jl[i]; /* next row to be added to k_th row */

     85:       /* compute multiplier */
     86:       ili = il[i];  /* index of first nonzero element in U(i,k:bms-1) */

     88:       /* uik = -inv(Di)*U_bar(i,k) */
     89:       diag = ba + i*9;
     90:       u    = ba + ili*9;

     92:       uik[0] = -(diag[0]*u[0] + diag[3]*u[1] + diag[6]*u[2]);
     93:       uik[1] = -(diag[1]*u[0] + diag[4]*u[1] + diag[7]*u[2]);
     94:       uik[2] = -(diag[2]*u[0] + diag[5]*u[1] + diag[8]*u[2]);

     96:       uik[3] = -(diag[0]*u[3] + diag[3]*u[4] + diag[6]*u[5]);
     97:       uik[4] = -(diag[1]*u[3] + diag[4]*u[4] + diag[7]*u[5]);
     98:       uik[5] = -(diag[2]*u[3] + diag[5]*u[4] + diag[8]*u[5]);

    100:       uik[6] = -(diag[0]*u[6] + diag[3]*u[7] + diag[6]*u[8]);
    101:       uik[7] = -(diag[1]*u[6] + diag[4]*u[7] + diag[7]*u[8]);
    102:       uik[8] = -(diag[2]*u[6] + diag[5]*u[7] + diag[8]*u[8]);

    104:       /* update D(k) += -U(i,k)^T * U_bar(i,k) */
    105:       dk[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
    106:       dk[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
    107:       dk[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

    109:       dk[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
    110:       dk[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
    111:       dk[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

    113:       dk[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
    114:       dk[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
    115:       dk[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];

    117:       PetscLogFlops(27.0*4.0);

    119:       /* update -U(i,k) */
    120:       PetscMemcpy(ba+ili*9,uik,9*sizeof(MatScalar));

    122:       /* add multiple of row i to k-th row ... */
    123:       jmin = ili + 1; jmax = bi[i+1];
    124:       if (jmin < jmax) {
    125:         for (j=jmin; j<jmax; j++) {
    126:           /* rtmp += -U(i,k)^T * U_bar(i,j) */
    127:           rtmp_ptr     = rtmp + bj[j]*9;
    128:           u            = ba + j*9;
    129:           rtmp_ptr[0] += uik[0]*u[0] + uik[1]*u[1] + uik[2]*u[2];
    130:           rtmp_ptr[1] += uik[3]*u[0] + uik[4]*u[1] + uik[5]*u[2];
    131:           rtmp_ptr[2] += uik[6]*u[0] + uik[7]*u[1] + uik[8]*u[2];

    133:           rtmp_ptr[3] += uik[0]*u[3] + uik[1]*u[4] + uik[2]*u[5];
    134:           rtmp_ptr[4] += uik[3]*u[3] + uik[4]*u[4] + uik[5]*u[5];
    135:           rtmp_ptr[5] += uik[6]*u[3] + uik[7]*u[4] + uik[8]*u[5];

    137:           rtmp_ptr[6] += uik[0]*u[6] + uik[1]*u[7] + uik[2]*u[8];
    138:           rtmp_ptr[7] += uik[3]*u[6] + uik[4]*u[7] + uik[5]*u[8];
    139:           rtmp_ptr[8] += uik[6]*u[6] + uik[7]*u[7] + uik[8]*u[8];
    140:         }
    141:         PetscLogFlops(2.0*27.0*(jmax-jmin));

    143:         /* ... add i to row list for next nonzero entry */
    144:         il[i] = jmin;             /* update il(i) in column k+1, ... mbs-1 */
    145:         j     = bj[jmin];
    146:         jl[i] = jl[j]; jl[j] = i; /* update jl */
    147:       }
    148:       i = nexti;
    149:     }

    151:     /* save nonzero entries in k-th row of U ... */

    153:     /* invert diagonal block */
    154:     diag = ba+k*9;
    155:     PetscMemcpy(diag,dk,9*sizeof(MatScalar));
    156:     PetscKernel_A_gets_inverse_A_3(diag,shift);

    158:     jmin = bi[k]; jmax = bi[k+1];
    159:     if (jmin < jmax) {
    160:       for (j=jmin; j<jmax; j++) {
    161:         vj       = bj[j];      /* block col. index of U */
    162:         u        = ba + j*9;
    163:         rtmp_ptr = rtmp + vj*9;
    164:         for (k1=0; k1<9; k1++) {
    165:           *u++        = *rtmp_ptr;
    166:           *rtmp_ptr++ = 0.0;
    167:         }
    168:       }

    170:       /* ... add k to row list for first nonzero entry in k-th row */
    171:       il[k] = jmin;
    172:       i     = bj[jmin];
    173:       jl[k] = jl[i]; jl[i] = k;
    174:     }
    175:   }

    177:   PetscFree(rtmp);
    178:   PetscFree2(il,jl);
    179:   PetscFree2(dk,uik);
    180:   if (a->permute) {
    181:     PetscFree(aa);
    182:   }

    184:   ISRestoreIndices(perm,&perm_ptr);

    186:   C->ops->solve          = MatSolve_SeqSBAIJ_3_inplace;
    187:   C->ops->solvetranspose = MatSolve_SeqSBAIJ_3_inplace;
    188:   C->assembled           = PETSC_TRUE;
    189:   C->preallocated        = PETSC_TRUE;

    191:   PetscLogFlops(1.3333*27*b->mbs); /* from inverting diagonal blocks */
    192:   return(0);
    193: }