Date: 2015-10-02T22:30:51+00:00

Actual source code: isutil.c
petsc-3.6.2 2015-10-02
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      1: #include <petsctao.h> /*I "petsctao.h" I*/
      2: #include <petsc/private/taoimpl.h>
      3: #include <petsc/private/matimpl.h>
      4: #include <../src/tao/matrix/submatfree.h>

      8: /*@C
      9:   TaoVecGetSubVec - Gets a subvector using the IS

     11:   Input Parameters:
     12: + vfull - the full matrix
     13: . is - the index set for the subvector
     14: . reduced_type - the method TAO is using for subsetting (TAO_SUBSET_SUBVEC, TAO_SUBSET_MASK,  TAO_SUBSET_MATRIXFREE)
     15: - maskvalue - the value to set the unused vector elements to (for TAO_SUBSET_MASK or TAO_SUBSET_MATRIXFREE)

     17:   Output Parameters:
     18: . vreduced - the subvector

     20:   Notes:
     21:   maskvalue should usually be 0.0, unless a pointwise divide will be used.

     23: @*/
     24: PetscErrorCode TaoVecGetSubVec(Vec vfull, IS is, TaoSubsetType reduced_type, PetscReal maskvalue, Vec *vreduced)
     25: {
     27:   PetscInt       nfull,nreduced,nreduced_local,rlow,rhigh,flow,fhigh;
     28:   PetscInt       i,nlocal;
     29:   PetscReal      *fv,*rv;
     30:   const PetscInt *s;
     31:   IS             ident;
     32:   VecType        vtype;
     33:   VecScatter     scatter;
     34:   MPI_Comm       comm;

     40:   VecGetSize(vfull, &nfull);
     41:   ISGetSize(is, &nreduced);

     43:   if (nreduced == nfull) {
     44:     VecDestroy(vreduced);
     45:     VecDuplicate(vfull,vreduced);
     46:     VecCopy(vfull,*vreduced);
     47:   } else {
     48:     switch (reduced_type) {
     49:     case TAO_SUBSET_SUBVEC:
     50:       VecGetType(vfull,&vtype);
     51:       VecGetOwnershipRange(vfull,&flow,&fhigh);
     52:       ISGetLocalSize(is,&nreduced_local);
     53:       PetscObjectGetComm((PetscObject)vfull,&comm);
     54:       if (*vreduced) {
     55:         VecDestroy(vreduced);
     56:       }
     57:       VecCreate(comm,vreduced);
     58:       VecSetType(*vreduced,vtype);

     60:       VecSetSizes(*vreduced,nreduced_local,nreduced);
     61:       VecGetOwnershipRange(*vreduced,&rlow,&rhigh);
     62:       ISCreateStride(comm,nreduced_local,rlow,1,&ident);
     63:       VecScatterCreate(vfull,is,*vreduced,ident,&scatter);
     64:       VecScatterBegin(scatter,vfull,*vreduced,INSERT_VALUES,SCATTER_FORWARD);
     65:       VecScatterEnd(scatter,vfull,*vreduced,INSERT_VALUES,SCATTER_FORWARD);
     66:       VecScatterDestroy(&scatter);
     67:       ISDestroy(&ident);
     68:       break;

     70:     case TAO_SUBSET_MASK:
     71:     case TAO_SUBSET_MATRIXFREE:
     72:       /* vr[i] = vf[i]   if i in is
     73:        vr[i] = 0       otherwise */
     74:       if (*vreduced == NULL) {
     75:         VecDuplicate(vfull,vreduced);
     76:       }

     78:       VecSet(*vreduced,maskvalue);
     79:       ISGetLocalSize(is,&nlocal);
     80:       VecGetOwnershipRange(vfull,&flow,&fhigh);
     81:       VecGetArray(vfull,&fv);
     82:       VecGetArray(*vreduced,&rv);
     83:       ISGetIndices(is,&s);
     84:       if (nlocal > (fhigh-flow)) SETERRQ2(PETSC_COMM_WORLD,1,"IS local size %d > Vec local size %d",nlocal,fhigh-flow);
     85:       for (i=0;i<nlocal;i++) {
     86:         rv[s[i]-flow] = fv[s[i]-flow];
     87:       }
     88:       ISRestoreIndices(is,&s);
     89:       VecRestoreArray(vfull,&fv);
     90:       VecRestoreArray(*vreduced,&rv);
     91:       break;
     92:     }
     93:   }
     94:   return(0);
     95: }

     99: /*@C
    100:   TaoMatGetSubMat - Gets a submatrix using the IS

    102:   Input Parameters:
    103: + M - the full matrix (n x n)
    104: . is - the index set for the submatrix (both row and column index sets need to be the same)
    105: . v1 - work vector of dimension n, needed for TAO_SUBSET_MASK option
    106: - subset_type - the method TAO is using for subsetting (TAO_SUBSET_SUBVEC, TAO_SUBSET_MASK,
    107:   TAO_SUBSET_MATRIXFREE)

    109:   Output Parameters:
    110: . Msub - the submatrix
    111: @*/
    112: PetscErrorCode TaoMatGetSubMat(Mat M, IS is, Vec v1, TaoSubsetType subset_type, Mat *Msub)
    113: {
    115:   IS             iscomp;
    116:   PetscBool      flg = PETSC_FALSE;

    121:   MatDestroy(Msub);
    122:   switch (subset_type) {
    123:   case TAO_SUBSET_SUBVEC:
    124:     MatGetSubMatrix(M, is, is, MAT_INITIAL_MATRIX, Msub);
    125:     break;

    127:   case TAO_SUBSET_MASK:
    128:     /* Get Reduced Hessian
    129:      Msub[i,j] = M[i,j] if i,j in Free_Local or i==j
    130:      Msub[i,j] = 0      if i!=j and i or j not in Free_Local
    131:      */
    132:     PetscOptionsBegin(PetscObjectComm((PetscObject)M),NULL,NULL,NULL);
    133:     PetscOptionsBool("-different_submatrix","use separate hessian matrix when computing submatrices","TaoSubsetType",flg,&flg,NULL);
    134:     PetscOptionsEnd();
    135:     if (flg) {
    136:       MatDuplicate(M, MAT_COPY_VALUES, Msub);
    137:     } else {
    138:       /* Act on hessian directly (default) */
    139:       PetscObjectReference((PetscObject)M);
    140:       *Msub = M;
    141:     }
    142:     /* Save the diagonal to temporary vector */
    143:     MatGetDiagonal(*Msub,v1);

    145:     /* Zero out rows and columns */
    146:     ISComplementVec(is,v1,&iscomp);

    148:     /* Use v1 instead of 0 here because of PETSc bug */
    149:     MatZeroRowsColumnsIS(*Msub,iscomp,1.0,v1,v1);

    151:     ISDestroy(&iscomp);
    152:     break;
    153:   case TAO_SUBSET_MATRIXFREE:
    154:     ISComplementVec(is,v1,&iscomp);
    155:     MatCreateSubMatrixFree(M,iscomp,iscomp,Msub);
    156:     ISDestroy(&iscomp);
    157:     break;
    158:   }
    159:   return(0);
    160: }