PetscBagRead
Date: 2015-10-02

    function
       petsc-3.6.2 2015-10-02
       Report Typos and Errors bag = PetscBagRead(fd)
    %
    %  Reads in PETSc binary file bag object
    %  emits as Matlab struct.  Called from
    %  PetscBinaryRead.m.
    %

    [name_len help_len] = ParsePetscBagDotH;

    bagsize = read(fd,1,'int32');  %  no longer used after petsc-3.2 just here for backward compatibility of the binary files
    count = read(fd,1,'int32');

    bag.bag_name      = deblank(char(read(fd,name_len,'uchar')'));
    bag.help.bag_help = deblank(char(read(fd,help_len,'uchar')'));

    for lcv = 1:count
      offsetdtype = read(fd,2,'int32');
      dtype = offsetdtype(2);
      name  = strclean(deblank(char(read(fd,name_len,'uchar')')));
      help  = deblank(char(read(fd,help_len,'uchar')'));
      msize = read(fd,1,'int32');

      if dtype == 0     % integer
        val = read(fd,msize,'int32');
      elseif dtype == 1 % double
        val = read(fd,msize,'double');
      elseif dtype == 6 % char
        val = deblank(char(read(fd,msize,'uchar')'));
      elseif dtype == 9 % truth
        val = read(fd,1,'int32');
    % PETSC_LOGICAL is a bit boolean and not currently handled
    %  elseif dtype == 7 % boolean
    %    val = read(fd,1,'bit1');
      elseif dtype == 8 % Enum
        val   = read(fd,1,'int32');
        n     = read(fd,1,'int32');
        sizes = read(fd,n,'int32');
        enumnames = {'  '};
        for i=1:n-2,
          enumnames{i} = deblank(char(read(fd,sizes(i),'uchar')));
        end
        val  = char(enumnames{val+1})';
        enumname   = deblank(char(read(fd,sizes(n-1),'uchar')));
        enumprefix = deblank(char(read(fd,sizes(n),'uchar')));
      else
        val = [];
        warning('Bag entry %s could not be read',name);
      end
      bag      = setfield(bag     ,name,val);
      bag.help = setfield(bag.help,name,help);
    end
    return

    % ---------------------------------------------------- %

    function [n, h] = ParsePetscBagDotH

       petscbagh = [GetPetscDir,'/include/petsc/private/bagimpl.h'];
       fid = fopen(petscbagh,'rt');
       if (fid<0)
          errstr = sprintf('Could not open %s.',petscbagh);
          error(errstr);
       end

       nametag = '#define PETSC_BAG_NAME_LENGTH';
       helptag = '#define PETSC_BAG_HELP_LENGTH';
       n = 0; h = 0;
       while ~feof(fid)
          lin = fgetl(fid);
          ni = strfind(lin,nametag);
          nh = strfind(lin,helptag);
          if ni
    	 n = str2num(lin(ni+length(nametag):end));
          elseif nh
    	 h = str2num(lin(nh+length(helptag):end));
          end
          if (n>0 & h>0) break; end;
       end
       if (n==0 | h==0)
          errstr = sprintf('Could not parse %s.',petscbagh);
          error(errstr);
       end
       fclose(fid);
       return

    % ---------------------------------------------------- %

    function str = strclean(str)

       badchars = ' ()[]<>{}.-';
       for i=1:length(badchars);
          str(strfind(str,badchars(i))) = '_';
       end
       return

    % ---------------------------------------------------- %

    function dir = GetPetscDir

       dir = getenv('PETSC_DIR');
       if length(dir)==0
          error(['Please set environment variable PETSC_DIR' ...
    	     ' and try again.'])
       end
       return