Date: 2015-10-02T22:10:38+00:00

Actual source code: submat.c
petsc-3.6.2 2015-10-02
Report Typos and Errors

      2: #include <petsc/private/matimpl.h>          /*I "petscmat.h" I*/

      4: typedef struct {
      5:   IS          isrow,iscol;      /* rows and columns in submatrix, only used to check consistency */
      6:   Vec         left,right;       /* optional scaling */
      7:   Vec         olwork,orwork;    /* work vectors outside the scatters, only touched by PreScale and only created if needed*/
      8:   Vec         lwork,rwork;      /* work vectors inside the scatters */
      9:   VecScatter  lrestrict,rprolong;
     10:   Mat         A;
     11:   PetscScalar scale;
     12: } Mat_SubMatrix;

     16: static PetscErrorCode PreScaleLeft(Mat N,Vec x,Vec *xx)
     17: {
     18:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

     22:   if (!Na->left) {
     23:     *xx = x;
     24:   } else {
     25:     if (!Na->olwork) {
     26:       VecDuplicate(Na->left,&Na->olwork);
     27:     }
     28:     VecPointwiseMult(Na->olwork,x,Na->left);
     29:     *xx  = Na->olwork;
     30:   }
     31:   return(0);
     32: }

     36: static PetscErrorCode PreScaleRight(Mat N,Vec x,Vec *xx)
     37: {
     38:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

     42:   if (!Na->right) {
     43:     *xx = x;
     44:   } else {
     45:     if (!Na->orwork) {
     46:       VecDuplicate(Na->right,&Na->orwork);
     47:     }
     48:     VecPointwiseMult(Na->orwork,x,Na->right);
     49:     *xx  = Na->orwork;
     50:   }
     51:   return(0);
     52: }

     56: static PetscErrorCode PostScaleLeft(Mat N,Vec x)
     57: {
     58:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

     62:   if (Na->left) {
     63:     VecPointwiseMult(x,x,Na->left);
     64:   }
     65:   return(0);
     66: }

     70: static PetscErrorCode PostScaleRight(Mat N,Vec x)
     71: {
     72:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

     76:   if (Na->right) {
     77:     VecPointwiseMult(x,x,Na->right);
     78:   }
     79:   return(0);
     80: }

     84: static PetscErrorCode MatScale_SubMatrix(Mat N,PetscScalar scale)
     85: {
     86:   Mat_SubMatrix *Na = (Mat_SubMatrix*)N->data;

     89:   Na->scale *= scale;
     90:   return(0);
     91: }

     95: static PetscErrorCode MatDiagonalScale_SubMatrix(Mat N,Vec left,Vec right)
     96: {
     97:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

    101:   if (left) {
    102:     if (!Na->left) {
    103:       VecDuplicate(left,&Na->left);
    104:       VecCopy(left,Na->left);
    105:     } else {
    106:       VecPointwiseMult(Na->left,left,Na->left);
    107:     }
    108:   }
    109:   if (right) {
    110:     if (!Na->right) {
    111:       VecDuplicate(right,&Na->right);
    112:       VecCopy(right,Na->right);
    113:     } else {
    114:       VecPointwiseMult(Na->right,right,Na->right);
    115:     }
    116:   }
    117:   return(0);
    118: }

    122: static PetscErrorCode MatMult_SubMatrix(Mat N,Vec x,Vec y)
    123: {
    124:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;
    125:   Vec            xx  = 0;

    129:   PreScaleRight(N,x,&xx);
    130:   VecZeroEntries(Na->rwork);
    131:   VecScatterBegin(Na->rprolong,xx,Na->rwork,INSERT_VALUES,SCATTER_FORWARD);
    132:   VecScatterEnd  (Na->rprolong,xx,Na->rwork,INSERT_VALUES,SCATTER_FORWARD);
    133:   MatMult(Na->A,Na->rwork,Na->lwork);
    134:   VecScatterBegin(Na->lrestrict,Na->lwork,y,INSERT_VALUES,SCATTER_FORWARD);
    135:   VecScatterEnd  (Na->lrestrict,Na->lwork,y,INSERT_VALUES,SCATTER_FORWARD);
    136:   PostScaleLeft(N,y);
    137:   VecScale(y,Na->scale);
    138:   return(0);
    139: }

    143: static PetscErrorCode MatMultAdd_SubMatrix(Mat N,Vec v1,Vec v2,Vec v3)
    144: {
    145:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;
    146:   Vec            xx  = 0;

    150:   PreScaleRight(N,v1,&xx);
    151:   VecZeroEntries(Na->rwork);
    152:   VecScatterBegin(Na->rprolong,xx,Na->rwork,INSERT_VALUES,SCATTER_FORWARD);
    153:   VecScatterEnd  (Na->rprolong,xx,Na->rwork,INSERT_VALUES,SCATTER_FORWARD);
    154:   MatMult(Na->A,Na->rwork,Na->lwork);
    155:   if (v2 == v3) {
    156:     if (Na->scale == (PetscScalar)1.0 && !Na->left) {
    157:       VecScatterBegin(Na->lrestrict,Na->lwork,v3,ADD_VALUES,SCATTER_FORWARD);
    158:       VecScatterEnd  (Na->lrestrict,Na->lwork,v3,ADD_VALUES,SCATTER_FORWARD);
    159:     } else {
    160:       if (!Na->olwork) {VecDuplicate(v3,&Na->olwork);}
    161:       VecScatterBegin(Na->lrestrict,Na->lwork,Na->olwork,INSERT_VALUES,SCATTER_FORWARD);
    162:       VecScatterEnd  (Na->lrestrict,Na->lwork,Na->olwork,INSERT_VALUES,SCATTER_FORWARD);
    163:       PostScaleLeft(N,Na->olwork);
    164:       VecAXPY(v3,Na->scale,Na->olwork);
    165:     }
    166:   } else {
    167:     VecScatterBegin(Na->lrestrict,Na->lwork,v3,INSERT_VALUES,SCATTER_FORWARD);
    168:     VecScatterEnd  (Na->lrestrict,Na->lwork,v3,INSERT_VALUES,SCATTER_FORWARD);
    169:     PostScaleLeft(N,v3);
    170:     VecAYPX(v3,Na->scale,v2);
    171:   }
    172:   return(0);
    173: }

    177: static PetscErrorCode MatMultTranspose_SubMatrix(Mat N,Vec x,Vec y)
    178: {
    179:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;
    180:   Vec            xx  = 0;

    184:   PreScaleLeft(N,x,&xx);
    185:   VecZeroEntries(Na->lwork);
    186:   VecScatterBegin(Na->lrestrict,xx,Na->lwork,INSERT_VALUES,SCATTER_REVERSE);
    187:   VecScatterEnd  (Na->lrestrict,xx,Na->lwork,INSERT_VALUES,SCATTER_REVERSE);
    188:   MatMultTranspose(Na->A,Na->lwork,Na->rwork);
    189:   VecScatterBegin(Na->rprolong,Na->rwork,y,INSERT_VALUES,SCATTER_REVERSE);
    190:   VecScatterEnd  (Na->rprolong,Na->rwork,y,INSERT_VALUES,SCATTER_REVERSE);
    191:   PostScaleRight(N,y);
    192:   VecScale(y,Na->scale);
    193:   return(0);
    194: }

    198: static PetscErrorCode MatMultTransposeAdd_SubMatrix(Mat N,Vec v1,Vec v2,Vec v3)
    199: {
    200:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;
    201:   Vec            xx  = 0;

    205:   PreScaleLeft(N,v1,&xx);
    206:   VecZeroEntries(Na->lwork);
    207:   VecScatterBegin(Na->lrestrict,xx,Na->lwork,INSERT_VALUES,SCATTER_REVERSE);
    208:   VecScatterEnd  (Na->lrestrict,xx,Na->lwork,INSERT_VALUES,SCATTER_REVERSE);
    209:   MatMultTranspose(Na->A,Na->lwork,Na->rwork);
    210:   if (v2 == v3) {
    211:     if (Na->scale == (PetscScalar)1.0 && !Na->right) {
    212:       VecScatterBegin(Na->rprolong,Na->rwork,v3,ADD_VALUES,SCATTER_REVERSE);
    213:       VecScatterEnd  (Na->rprolong,Na->rwork,v3,ADD_VALUES,SCATTER_REVERSE);
    214:     } else {
    215:       if (!Na->orwork) {VecDuplicate(v3,&Na->orwork);}
    216:       VecScatterBegin(Na->rprolong,Na->rwork,Na->orwork,INSERT_VALUES,SCATTER_REVERSE);
    217:       VecScatterEnd  (Na->rprolong,Na->rwork,Na->orwork,INSERT_VALUES,SCATTER_REVERSE);
    218:       PostScaleRight(N,Na->orwork);
    219:       VecAXPY(v3,Na->scale,Na->orwork);
    220:     }
    221:   } else {
    222:     VecScatterBegin(Na->rprolong,Na->rwork,v3,INSERT_VALUES,SCATTER_REVERSE);
    223:     VecScatterEnd  (Na->rprolong,Na->rwork,v3,INSERT_VALUES,SCATTER_REVERSE);
    224:     PostScaleRight(N,v3);
    225:     VecAYPX(v3,Na->scale,v2);
    226:   }
    227:   return(0);
    228: }

    232: static PetscErrorCode MatDestroy_SubMatrix(Mat N)
    233: {
    234:   Mat_SubMatrix  *Na = (Mat_SubMatrix*)N->data;

    238:   ISDestroy(&Na->isrow);
    239:   ISDestroy(&Na->iscol);
    240:   VecDestroy(&Na->left);
    241:   VecDestroy(&Na->right);
    242:   VecDestroy(&Na->olwork);
    243:   VecDestroy(&Na->orwork);
    244:   VecDestroy(&Na->lwork);
    245:   VecDestroy(&Na->rwork);
    246:   VecScatterDestroy(&Na->lrestrict);
    247:   VecScatterDestroy(&Na->rprolong);
    248:   MatDestroy(&Na->A);
    249:   PetscFree(N->data);
    250:   return(0);
    251: }

    255: /*@
    256:    MatCreateSubMatrix - Creates a composite matrix that acts as a submatrix

    258:    Collective on Mat

    260:    Input Parameters:
    261: +  A - matrix that we will extract a submatrix of
    262: .  isrow - rows to be present in the submatrix
    263: -  iscol - columns to be present in the submatrix

    265:    Output Parameters:
    266: .  newmat - new matrix

    268:    Level: developer

    270:    Notes:
    271:    Most will use MatGetSubMatrix which provides a more efficient representation if it is available.

    273: .seealso: MatGetSubMatrix(), MatSubMatrixUpdate()
    274: @*/
    275: PetscErrorCode  MatCreateSubMatrix(Mat A,IS isrow,IS iscol,Mat *newmat)
    276: {
    277:   Vec            left,right;
    278:   PetscInt       m,n;
    279:   Mat            N;
    280:   Mat_SubMatrix  *Na;

    288:   *newmat = 0;

    290:   MatCreate(PetscObjectComm((PetscObject)A),&N);
    291:   ISGetLocalSize(isrow,&m);
    292:   ISGetLocalSize(iscol,&n);
    293:   MatSetSizes(N,m,n,PETSC_DETERMINE,PETSC_DETERMINE);
    294:   PetscObjectChangeTypeName((PetscObject)N,MATSUBMATRIX);

    296:   PetscNewLog(N,&Na);
    297:   N->data   = (void*)Na;
    298:   PetscObjectReference((PetscObject)A);
    299:   PetscObjectReference((PetscObject)isrow);
    300:   PetscObjectReference((PetscObject)iscol);
    301:   Na->A     = A;
    302:   Na->isrow = isrow;
    303:   Na->iscol = iscol;
    304:   Na->scale = 1.0;

    306:   N->ops->destroy          = MatDestroy_SubMatrix;
    307:   N->ops->mult             = MatMult_SubMatrix;
    308:   N->ops->multadd          = MatMultAdd_SubMatrix;
    309:   N->ops->multtranspose    = MatMultTranspose_SubMatrix;
    310:   N->ops->multtransposeadd = MatMultTransposeAdd_SubMatrix;
    311:   N->ops->scale            = MatScale_SubMatrix;
    312:   N->ops->diagonalscale    = MatDiagonalScale_SubMatrix;

    314:   MatSetBlockSizesFromMats(N,A,A);
    315:   PetscLayoutSetUp(N->rmap);
    316:   PetscLayoutSetUp(N->cmap);

    318:   MatCreateVecs(A,&Na->rwork,&Na->lwork);
    319:   VecCreate(PetscObjectComm((PetscObject)isrow),&left);
    320:   VecCreate(PetscObjectComm((PetscObject)iscol),&right);
    321:   VecSetSizes(left,m,PETSC_DETERMINE);
    322:   VecSetSizes(right,n,PETSC_DETERMINE);
    323:   VecSetUp(left);
    324:   VecSetUp(right);
    325:   VecScatterCreate(Na->lwork,isrow,left,NULL,&Na->lrestrict);
    326:   VecScatterCreate(right,NULL,Na->rwork,iscol,&Na->rprolong);
    327:   VecDestroy(&left);
    328:   VecDestroy(&right);

    330:   N->assembled = PETSC_TRUE;

    332:   MatSetUp(N);

    334:   *newmat      = N;
    335:   return(0);
    336: }

    341: /*@
    342:    MatSubMatrixUpdate - Updates a submatrix

    344:    Collective on Mat

    346:    Input Parameters:
    347: +  N - submatrix to update
    348: .  A - full matrix in the submatrix
    349: .  isrow - rows in the update (same as the first time the submatrix was created)
    350: -  iscol - columns in the update (same as the first time the submatrix was created)

    352:    Level: developer

    354:    Notes:
    355:    Most will use MatGetSubMatrix which provides a more efficient representation if it is available.

    357: .seealso: MatGetSubMatrix(), MatCreateSubMatrix()
    358: @*/
    359: PetscErrorCode  MatSubMatrixUpdate(Mat N,Mat A,IS isrow,IS iscol)
    360: {
    362:   PetscBool      flg;
    363:   Mat_SubMatrix  *Na;

    370:   PetscObjectTypeCompare((PetscObject)N,MATSUBMATRIX,&flg);
    371:   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix has wrong type");

    373:   Na   = (Mat_SubMatrix*)N->data;
    374:   ISEqual(isrow,Na->isrow,&flg);
    375:   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cannot update submatrix with different row indices");
    376:   ISEqual(iscol,Na->iscol,&flg);
    377:   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Cannot update submatrix with different column indices");

    379:   PetscObjectReference((PetscObject)A);
    380:   MatDestroy(&Na->A);
    381:   Na->A = A;

    383:   Na->scale = 1.0;
    384:   VecDestroy(&Na->left);
    385:   VecDestroy(&Na->right);
    386:   return(0);
    387: }