Date: 2013-07-02T14:50:08+00:00

Actual source code: ex30.c
petsc-3.4.2 2013-07-02

      1: static const char help[] = "Steady-state 2D subduction flow, pressure and temperature solver.\n\
      2:        The flow is driven by the subducting slab.\n\
      3: ---------------------------------ex30 help---------------------------------\n\
      4:   -OPTION <DEFAULT> = (UNITS) DESCRIPTION.\n\n\
      5:   -width <320> = (km) width of domain.\n\
      6:   -depth <300> = (km) depth of domain.\n\
      7:   -slab_dip <45> = (degrees) dip angle of the slab (determines the grid aspect ratio).\n\
      8:   -lid_depth <35> = (km) depth of the static conductive lid.\n\
      9:   -fault_depth <35> = (km) depth of slab-wedge mechanical coupling\n\
     10:      (fault dept >= lid depth).\n\
     11: \n\
     12:   -ni <82> = grid cells in x-direction. (nj adjusts to accommodate\n\
     13:       the slab dip & depth). DO NOT USE -da_grid_x option!!!\n\
     14:   -ivisc <3> = rheology option.\n\
     15:       0 --- constant viscosity.\n\
     16:       1 --- olivine diffusion creep rheology (T&P-dependent, newtonian).\n\
     17:       2 --- olivine dislocation creep rheology (T&P-dependent, non-newtonian).\n\
     18:       3 --- Full mantle rheology, combination of 1 & 2.\n\
     19: \n\
     20:   -slab_velocity <5> = (cm/year) convergence rate of slab into subduction zone.\n\
     21:   -slab_age <50> = (million yrs) age of slab for thermal profile boundary condition.\n\
     22:   -lid_age <50> = (million yrs) age of lid for thermal profile boundary condition.\n\
     23: \n\
     24:   FOR OTHER PARAMETER OPTIONS AND THEIR DEFAULT VALUES, see SetParams() in ex30.c.\n\
     25: ---------------------------------ex30 help---------------------------------\n";

This PETSc 2.2.0 example by Richard F. Katz
http://www.ldeo.columbia.edu/~katz/
The problem is modeled by the partial differential equation system
\begin{eqnarray}
-\nabla P + \nabla \cdot [\eta (\nabla v + \nabla v^T)] & = & 0 \\
\nabla \cdot v & = & 0 \\
dT/dt + \nabla \cdot (vT) - 1/Pe \triangle^2(T) & = & 0 \\
\end{eqnarray}
\begin{eqnarray}
\eta(T,Eps\_dot) & = & \hbox{constant } \hbox{if ivisc} ==0 \\
& = & \hbox{diffusion creep (T,P-dependent) } \hbox{if ivisc} ==1 \\
& = & \hbox{dislocation creep (T,P,v-dependent)} \hbox{if ivisc} ==2 \\
& = & \hbox{mantle viscosity (difn and disl) } \hbox{if ivisc} ==3
\end{eqnarray}
which is uniformly discretized on a staggered mesh:
-------$w_{ij}$------
$u_{i-1j}$ $P,T_{ij}$ $u_{ij}$
------$w_{ij-1}$-----

     55: #include <petscsnes.h>
     56: #include <petscdmda.h>

     58: #define VISC_CONST   0
     59: #define VISC_DIFN    1
     60: #define VISC_DISL    2
     61: #define VISC_FULL    3
     62: #define CELL_CENTER  0
     63: #define CELL_CORNER  1
     64: #define BC_ANALYTIC  0
     65: #define BC_NOSTRESS  1
     66: #define BC_EXPERMNT  2
     67: #define ADVECT_FV    0
     68: #define ADVECT_FROMM 1
     69: #define PLATE_SLAB   0
     70: #define PLATE_LID    1
     71: #define EPS_ZERO     0.00000001

     73: typedef struct { /* holds the variables to be solved for */
     74:   PetscScalar u,w,p,T;
     75: } Field;

     77: typedef struct { /* parameters needed to compute viscosity */
     78:   PetscReal A,n,Estar,Vstar;
     79: } ViscParam;

     81: typedef struct { /* physical and miscelaneous parameters */
     82:   PetscReal width, depth, scaled_width, scaled_depth, peclet, potentialT;
     83:   PetscReal slab_dip, slab_age, slab_velocity, kappa, z_scale;
     84:   PetscReal c, d, sb, cb, skt, visc_cutoff, lid_age, eta0, continuation;
     85:   PetscReal L, V, lid_depth, fault_depth;
     86:   ViscParam diffusion, dislocation;
     87:   PetscInt  ivisc, adv_scheme, ibound, output_ivisc;
     88:   PetscBool quiet, param_test, output_to_file, pv_analytic;
     89:   PetscBool interrupted, stop_solve, toggle_kspmon, kspmon;
     90:   char      filename[PETSC_MAX_PATH_LEN];
     91: } Parameter;

     93: typedef struct { /* grid parameters */
     94:   DMDABoundaryType bx,by;
     95:   DMDAStencilType  stencil;
     96:   PetscInt         corner,ni,nj,jlid,jfault,inose;
     97:   PetscInt         dof,stencil_width,mglevels;
     98:   PetscReal        dx,dz;
     99: } GridInfo;

    101: typedef struct { /* application context */
    102:   Vec       x,Xguess;
    103:   Parameter *param;
    104:   GridInfo  *grid;
    105: } AppCtx;

    107: /* Callback functions (static interface) */
    108: extern PetscErrorCode FormFunctionLocal(DMDALocalInfo*,Field**,Field**,void*);

    110: /* Main routines */
    111: extern PetscErrorCode SetParams(Parameter*, GridInfo*);
    112: extern PetscErrorCode ReportParams(Parameter*, GridInfo*);
    113: extern PetscErrorCode Initialize(DM);
    114: extern PetscErrorCode UpdateSolution(SNES,AppCtx*, PetscInt*);
    115: extern PetscErrorCode DoOutput(SNES,PetscInt);

    117: /* Post-processing & misc */
    118: extern PetscErrorCode ViscosityField(DM,Vec,Vec);
    119: extern PetscErrorCode StressField(DM);
    120: extern PetscErrorCode SNESConverged_Interactive(SNES, PetscInt, PetscReal, PetscReal, PetscReal, SNESConvergedReason*, void*);
    121: extern PetscErrorCode InteractiveHandler(int, void*);
    122: extern PetscBool  OptionsHasName(const char pre[],const char name[]);

    124: /*-----------------------------------------------------------------------*/
    127: int main(int argc,char **argv)
    128: /*-----------------------------------------------------------------------*/
    129: {
    130:   SNES           snes;
    131:   AppCtx         *user;               /* user-defined work context */
    132:   Parameter      param;
    133:   GridInfo       grid;
    134:   PetscInt       nits;
    136:   MPI_Comm       comm;
    137:   DM             da;

    139:   PetscInitialize(&argc,&argv,(char*)0,help);
    140:   PetscOptionsSetValue("-file","ex30_output");
    141:   PetscOptionsSetValue("-snes_monitor_short",NULL);
    142:   PetscOptionsSetValue("-snes_max_it","20");
    143:   PetscOptionsSetValue("-ksp_max_it","1500");
    144:   PetscOptionsSetValue("-ksp_gmres_restart","300");
    145:   PetscOptionsInsert(&argc,&argv,NULL);

    147:   comm = PETSC_COMM_WORLD;

    149:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    150:      Set up the problem parameters.
    151:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    152:   SetParams(&param,&grid);
    153:   ReportParams(&param,&grid);

    155:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    156:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    157:   SNESCreate(comm,&snes);
    158:   DMDACreate2d(comm,grid.bx,grid.by,grid.stencil,grid.ni,grid.nj,PETSC_DECIDE,PETSC_DECIDE,grid.dof,grid.stencil_width,0,0,&da);
    159:   SNESSetDM(snes,da);
    160:   DMDASetFieldName(da,0,"x-velocity");
    161:   DMDASetFieldName(da,1,"y-velocity");
    162:   DMDASetFieldName(da,2,"pressure");
    163:   DMDASetFieldName(da,3,"temperature");

    166:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    167:      Create user context, set problem data, create vector data structures.
    168:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    169:   PetscMalloc(sizeof(AppCtx),&user);
    170:   user->param = &param;
    171:   user->grid  = &grid;
    172:   DMSetApplicationContext(da,user);
    173:   DMCreateGlobalVector(da,&(user->Xguess));

    176:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    177:      Set up the SNES solver with callback functions.
    178:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    179:   DMDASNESSetFunctionLocal(da,INSERT_VALUES,(PetscErrorCode (*)(DMDALocalInfo*,void*,void*,void*))FormFunctionLocal,(void*)user);
    180:   SNESSetFromOptions(snes);

    183:   SNESSetConvergenceTest(snes,SNESConverged_Interactive,(void*)user,NULL);
    184:   PetscPushSignalHandler(InteractiveHandler,(void*)user);

    186:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    187:      Initialize and solve the nonlinear system
    188:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    189:   Initialize(da);
    190:   UpdateSolution(snes,user,&nits);

    192:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    193:      Output variables.
    194:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    195:   DoOutput(snes,nits);

    197:   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    198:      Free work space.
    199:      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
    200:   VecDestroy(&user->Xguess);
    201:   VecDestroy(&user->x);
    202:   PetscFree(user);
    203:   SNESDestroy(&snes);
    204:   DMDestroy(&da);
    205:   PetscPopSignalHandler();
    206:   PetscFinalize();
    207:   return 0;
    208: }

    210: /*=====================================================================
    211:   PETSc INTERACTION FUNCTIONS (initialize & call SNESSolve)
    212:   =====================================================================*/

    214: /*---------------------------------------------------------------------*/
    217: /*  manages solve: adaptive continuation method  */
    218: PetscErrorCode UpdateSolution(SNES snes, AppCtx *user, PetscInt *nits)
    219: {
    220:   KSP                 ksp;
    221:   PC                  pc;
    222:   SNESConvergedReason reason;
    223:   Parameter           *param   = user->param;
    224:   PetscReal           cont_incr=0.3;
    225:   PetscInt            its;
    226:   PetscErrorCode      ierr;
    227:   PetscBool           q = PETSC_FALSE;
    228:   DM                  dm;

    231:   SNESGetDM(snes,&dm);
    232:   DMCreateGlobalVector(dm,&user->x);
    233:   SNESGetKSP(snes,&ksp);
    234:   KSPGetPC(ksp, &pc);
    235:   KSPSetComputeSingularValues(ksp, PETSC_TRUE);

    237:   *nits=0;

    239:   /* Isoviscous solve */
    240:   if (param->ivisc == VISC_CONST && !param->stop_solve) {
    241:     param->ivisc = VISC_CONST;

    243:     SNESSolve(snes,0,user->x);
    244:     SNESGetConvergedReason(snes,&reason);
    245:     SNESGetIterationNumber(snes,&its);
    246:     *nits += its;
    247:     VecCopy(user->x,user->Xguess);
    248:     if (param->stop_solve) goto done;
    249:   }

    251:   /* Olivine diffusion creep */
    252:   if (param->ivisc >= VISC_DIFN && !param->stop_solve) {
    253:     if (!q) PetscPrintf(PETSC_COMM_WORLD,"Computing Variable Viscosity Solution\n");

    255:     /* continuation method on viscosity cutoff */
    256:     for (param->continuation=0.0;; param->continuation+=cont_incr) {
    257:       if (!q) PetscPrintf(PETSC_COMM_WORLD," Continuation parameter = %G\n", param->continuation);

    259:       /* solve the non-linear system */
    260:       VecCopy(user->Xguess,user->x);
    261:       SNESSolve(snes,0,user->x);
    262:       SNESGetConvergedReason(snes,&reason);
    263:       SNESGetIterationNumber(snes,&its);
    264:       *nits += its;
    265:       if (!q) PetscPrintf(PETSC_COMM_WORLD," SNES iterations: %D, Cumulative: %D\n", its, *nits);
    266:       if (param->stop_solve) goto done;

    268:       if (reason<0) {
    269:         /* NOT converged */
    270:         cont_incr = -fabs(cont_incr)/2.0;
    271:         if (fabs(cont_incr)<0.01) goto done;

    273:       } else {
    274:         /* converged */
    275:         VecCopy(user->x,user->Xguess);
    276:         if (param->continuation >= 1.0) goto done;
    277:         if (its<=3)      cont_incr = 0.30001;
    278:         else if (its<=8) cont_incr = 0.15001;
    279:         else             cont_incr = 0.10001;

    281:         if (param->continuation+cont_incr > 1.0) cont_incr = 1.0 - param->continuation;
    282:       } /* endif reason<0 */
    283:     }
    284:   }
    285: done:
    286:   if (param->stop_solve && !q) PetscPrintf(PETSC_COMM_WORLD,"USER SIGNAL: stopping solve.\n");
    287:   if (reason<0 && !q) PetscPrintf(PETSC_COMM_WORLD,"FAILED TO CONVERGE: stopping solve.\n");
    288:   return(0);
    289: }

    292: /*=====================================================================
    293:   PHYSICS FUNCTIONS (compute the discrete residual)
    294:   =====================================================================*/

    297: /*---------------------------------------------------------------------*/
    300: PETSC_STATIC_INLINE PetscScalar UInterp(Field **x, PetscInt i, PetscInt j)
    301: /*---------------------------------------------------------------------*/
    302: {
    303:   return 0.25*(x[j][i].u+x[j+1][i].u+x[j][i+1].u+x[j+1][i+1].u);
    304: }

    306: /*---------------------------------------------------------------------*/
    309: PETSC_STATIC_INLINE PetscScalar WInterp(Field **x, PetscInt i, PetscInt j)
    310: /*---------------------------------------------------------------------*/
    311: {
    312:   return 0.25*(x[j][i].w+x[j+1][i].w+x[j][i+1].w+x[j+1][i+1].w);
    313: }

    315: /*---------------------------------------------------------------------*/
    318: PETSC_STATIC_INLINE PetscScalar PInterp(Field **x, PetscInt i, PetscInt j)
    319: /*---------------------------------------------------------------------*/
    320: {
    321:   return 0.25*(x[j][i].p+x[j+1][i].p+x[j][i+1].p+x[j+1][i+1].p);
    322: }

    324: /*---------------------------------------------------------------------*/
    327: PETSC_STATIC_INLINE PetscScalar TInterp(Field **x, PetscInt i, PetscInt j)
    328: /*---------------------------------------------------------------------*/
    329: {
    330:   return 0.25*(x[j][i].T+x[j+1][i].T+x[j][i+1].T+x[j+1][i+1].T);
    331: }

    333: /*---------------------------------------------------------------------*/
    336: /*  isoviscous analytic solution for IC */
    337: PETSC_STATIC_INLINE PassiveScalar HorizVelocity(PetscInt i, PetscInt j, AppCtx *user)
    338: /*---------------------------------------------------------------------*/
    339: {
    340:   Parameter   *param = user->param;
    341:   GridInfo    *grid  = user->grid;
    342:   PetscScalar st, ct, th, c=param->c, d=param->d;
    343:   PetscReal   x, z,r;

    345:   x  = (i - grid->jlid)*grid->dx;  z = (j - grid->jlid - 0.5)*grid->dz;
    346:   r  = PetscSqrtReal(x*x+z*z);
    347:   st = z/r;
    348:   ct = x/r;
    349:   th = atan(z/x);
    350:   return ct*(c*th*st+d*(st+th*ct)) + st*(c*(st-th*ct)+d*th*st);
    351: }

    353: /*---------------------------------------------------------------------*/
    356: /*  isoviscous analytic solution for IC */
    357: PETSC_STATIC_INLINE PetscScalar VertVelocity(PetscInt i, PetscInt j, AppCtx *user)
    358: /*---------------------------------------------------------------------*/
    359: {
    360:   Parameter   *param = user->param;
    361:   GridInfo    *grid  = user->grid;
    362:   PetscScalar st, ct, th, c=param->c, d=param->d;
    363:   PetscReal   x, z, r;

    365:   x = (i - grid->jlid - 0.5)*grid->dx;  z = (j - grid->jlid)*grid->dz;
    366:   r = PetscSqrtReal(x*x+z*z); st = z/r;  ct = x/r;  th = atan(z/x);
    367:   return st*(c*th*st+d*(st+th*ct)) - ct*(c*(st-th*ct)+d*th*st);
    368: }

    370: /*---------------------------------------------------------------------*/
    373: /*  isoviscous analytic solution for IC */
    374: PETSC_STATIC_INLINE PetscScalar Pressure(PetscInt i, PetscInt j, AppCtx *user)
    375: /*---------------------------------------------------------------------*/
    376: {
    377:   Parameter   *param = user->param;
    378:   GridInfo    *grid  = user->grid;
    379:   PetscScalar x, z, r, st, ct, c=param->c, d=param->d;

    381:   x = (i - grid->jlid - 0.5)*grid->dx;  z = (j - grid->jlid - 0.5)*grid->dz;
    382:   r = PetscSqrtReal(x*x+z*z);  st = z/r;  ct = x/r;
    383:   return (-2.0*(c*ct-d*st)/r);
    384: }

    388: /*  computes the second invariant of the strain rate tensor */
    389: PETSC_STATIC_INLINE PetscScalar CalcSecInv(Field **x, PetscInt i, PetscInt j, PetscInt ipos, AppCtx *user)
    390: /*---------------------------------------------------------------------*/
    391: {
    392:   Parameter   *param = user->param;
    393:   GridInfo    *grid  = user->grid;
    394:   PetscInt    ilim   =grid->ni-1, jlim=grid->nj-1;
    395:   PetscScalar uN,uS,uE,uW,wN,wS,wE,wW;
    396:   PetscScalar eps11, eps12, eps22;

    398:   if (i<j) return EPS_ZERO;
    399:   if (i==ilim) i--;
    400:   if (j==jlim) j--;

    402:   if (ipos==CELL_CENTER) { /* on cell center */
    403:     if (j<=grid->jlid) return EPS_ZERO;

    405:     uE = x[j][i].u; uW = x[j][i-1].u;
    406:     wN = x[j][i].w; wS = x[j-1][i].w;
    407:     wE = WInterp(x,i,j-1);
    408:     if (i==j) {
    409:       uN = param->cb; wW = param->sb;
    410:     } else {
    411:       uN = UInterp(x,i-1,j); wW = WInterp(x,i-1,j-1);
    412:     }

    414:     if (j==grid->jlid+1) uS = 0.0;
    415:     else                 uS = UInterp(x,i-1,j-1);

    417:   } else {       /* on CELL_CORNER */
    418:     if (j<grid->jlid) return EPS_ZERO;

    420:     uN = x[j+1][i].u;  uS = x[j][i].u;
    421:     wE = x[j][i+1].w;  wW = x[j][i].w;
    422:     if (i==j) {
    423:       wN = param->sb;
    424:       uW = param->cb;
    425:     } else {
    426:       wN = WInterp(x,i,j);
    427:       uW = UInterp(x,i-1,j);
    428:     }

    430:     if (j==grid->jlid) {
    431:       uE = 0.0;  uW = 0.0;
    432:       uS = -uN;
    433:       wS = -wN;
    434:     } else {
    435:       uE = UInterp(x,i,j);
    436:       wS = WInterp(x,i,j-1);
    437:     }
    438:   }

    440:   eps11 = (uE-uW)/grid->dx;  eps22 = (wN-wS)/grid->dz;
    441:   eps12 = 0.5*((uN-uS)/grid->dz + (wE-wW)/grid->dx);

    443:   return PetscSqrtReal(0.5*(eps11*eps11 + 2.0*eps12*eps12 + eps22*eps22));
    444: }

    446: /*---------------------------------------------------------------------*/
    449: /*  computes the shear viscosity */
    450: PETSC_STATIC_INLINE PetscScalar Viscosity(PetscScalar T, PetscScalar eps, PassiveScalar z, Parameter *param)
    451: /*---------------------------------------------------------------------*/
    452: {
    453:   PetscReal   result   =0.0;
    454:   ViscParam   difn     =param->diffusion, disl=param->dislocation;
    455:   PetscInt    iVisc    =param->ivisc;
    456:   PetscScalar eps_scale=param->V/(param->L*1000.0);
    457:   PetscScalar strain_power, v1, v2, P;
    458:   PetscScalar rho_g = 32340.0, R=8.3144;

    460:   P = rho_g*(z*param->L*1000.0); /* Pa */

    462:   if (iVisc==VISC_CONST) {
    463:     /* constant viscosity */
    464:     return 1.0;
    465:   } else if (iVisc==VISC_DIFN) {
    466:     /* diffusion creep rheology */
    467:     result = PetscRealPart((difn.A*PetscExpScalar((difn.Estar + P*difn.Vstar)/R/(T+273.0))/param->eta0));
    468:   } else if (iVisc==VISC_DISL) {
    469:     /* dislocation creep rheology */
    470:     strain_power = PetscPowScalar(eps*eps_scale, (1.0-disl.n)/disl.n);

    472:     result = PetscRealPart(disl.A*PetscExpScalar((disl.Estar + P*disl.Vstar)/disl.n/R/(T+273.0))*strain_power/param->eta0);
    473:   } else if (iVisc==VISC_FULL) {
    474:     /* dislocation/diffusion creep rheology */
    475:     strain_power = PetscPowScalar(eps*eps_scale, (1.0-disl.n)/disl.n);

    477:     v1 = difn.A*PetscExpScalar((difn.Estar + P*difn.Vstar)/R/(T+273.0))/param->eta0;
    478:     v2 = disl.A*PetscExpScalar((disl.Estar + P*disl.Vstar)/disl.n/R/(T+273.0))*strain_power/param->eta0;

    480:     result = PetscRealPart(1.0/(1.0/v1 + 1.0/v2));
    481:   }

    483:   /* max viscosity is param->eta0 */
    484:   result = PetscMin(result, 1.0);
    485:   /* min viscosity is param->visc_cutoff */
    486:   result = PetscMax(result, param->visc_cutoff);
    487:   /* continuation method */
    488:   result = PetscPowReal(result,param->continuation);
    489:   return result;
    490: }

    492: /*---------------------------------------------------------------------*/
    495: /*  computes the residual of the x-component of eqn (1) above */
    496: PETSC_STATIC_INLINE PetscScalar XMomentumResidual(Field **x, PetscInt i, PetscInt j, AppCtx *user)
    497: /*---------------------------------------------------------------------*/
    498: {
    499:   Parameter   *param=user->param;
    500:   GridInfo    *grid =user->grid;
    501:   PetscScalar dx    = grid->dx, dz=grid->dz;
    502:   PetscScalar etaN,etaS,etaE,etaW,epsN=0.0,epsS=0.0,epsE=0.0,epsW=0.0;
    503:   PetscScalar TE=0.0,TN=0.0,TS=0.0,TW=0.0, dPdx, residual, z_scale;
    504:   PetscScalar dudxW,dudxE,dudzN,dudzS,dwdxN,dwdxS;
    505:   PetscInt    jlim = grid->nj-1;

    507:   z_scale = param->z_scale;

    509:   if (param->ivisc==VISC_DIFN || param->ivisc>=VISC_DISL) { /* viscosity is T-dependent */
    510:     TS = param->potentialT * TInterp(x,i,j-1) * exp((j-1.0)*dz*z_scale);
    511:     if (j==jlim) TN = TS;
    512:     else         TN = param->potentialT * TInterp(x,i,j) * exp(j*dz*z_scale);
    513:     TW = param->potentialT * x[j][i].T        * exp((j-0.5)*dz*z_scale);
    514:     TE = param->potentialT * x[j][i+1].T      * exp((j-0.5)*dz*z_scale);
    515:     if (param->ivisc>=VISC_DISL) { /* olivine dislocation creep */
    516:       epsN = CalcSecInv(x,i,j,  CELL_CORNER,user);
    517:       epsS = CalcSecInv(x,i,j-1,CELL_CORNER,user);
    518:       epsE = CalcSecInv(x,i+1,j,CELL_CENTER,user);
    519:       epsW = CalcSecInv(x,i,j,  CELL_CENTER,user);
    520:     }
    521:   }
    522:   etaN = Viscosity(TN,epsN,dz*(j+0.5),param);
    523:   etaS = Viscosity(TS,epsS,dz*(j-0.5),param);
    524:   etaW = Viscosity(TW,epsW,dz*j,param);
    525:   etaE = Viscosity(TE,epsE,dz*j,param);

    527:   dPdx = (x[j][i+1].p - x[j][i].p)/dx;
    528:   if (j==jlim) dudzN = etaN * (x[j][i].w   - x[j][i+1].w)/dx;
    529:   else         dudzN = etaN * (x[j+1][i].u - x[j][i].u)  /dz;
    530:   dudzS = etaS * (x[j][i].u    - x[j-1][i].u)/dz;
    531:   dudxE = etaE * (x[j][i+1].u  - x[j][i].u)  /dx;
    532:   dudxW = etaW * (x[j][i].u    - x[j][i-1].u)/dx;

    534:   residual = -dPdx                          /* X-MOMENTUM EQUATION*/
    535:              +(dudxE - dudxW)/dx
    536:              +(dudzN - dudzS)/dz;

    538:   if (param->ivisc!=VISC_CONST) {
    539:     dwdxN = etaN * (x[j][i+1].w   - x[j][i].w)  /dx;
    540:     dwdxS = etaS * (x[j-1][i+1].w - x[j-1][i].w)/dx;

    542:     residual += (dudxE - dudxW)/dx + (dwdxN - dwdxS)/dz;
    543:   }

    545:   return residual;
    546: }

    548: /*---------------------------------------------------------------------*/
    551: /*  computes the residual of the z-component of eqn (1) above */
    552: PETSC_STATIC_INLINE PetscScalar ZMomentumResidual(Field **x, PetscInt i, PetscInt j, AppCtx *user)
    553: /*---------------------------------------------------------------------*/
    554: {
    555:   Parameter   *param=user->param;
    556:   GridInfo    *grid =user->grid;
    557:   PetscScalar dx    = grid->dx, dz=grid->dz;
    558:   PetscScalar etaN  =0.0,etaS=0.0,etaE=0.0,etaW=0.0,epsN=0.0,epsS=0.0,epsE=0.0,epsW=0.0;
    559:   PetscScalar TE    =0.0,TN=0.0,TS=0.0,TW=0.0, dPdz, residual,z_scale;
    560:   PetscScalar dudzE,dudzW,dwdxW,dwdxE,dwdzN,dwdzS;
    561:   PetscInt    ilim = grid->ni-1;

    563:   /* geometric and other parameters */
    564:   z_scale = param->z_scale;

    566:   /* viscosity */
    567:   if (param->ivisc==VISC_DIFN || param->ivisc>=VISC_DISL) { /* viscosity is T-dependent */
    568:     TN = param->potentialT * x[j+1][i].T      * exp((j+0.5)*dz*z_scale);
    569:     TS = param->potentialT * x[j][i].T        * exp((j-0.5)*dz*z_scale);
    570:     TW = param->potentialT * TInterp(x,i-1,j) * exp(j*dz*z_scale);
    571:     if (i==ilim) TE = TW;
    572:     else         TE = param->potentialT * TInterp(x,i,j) * exp(j*dz*z_scale);
    573:     if (param->ivisc>=VISC_DISL) { /* olivine dislocation creep */
    574:       epsN = CalcSecInv(x,i,j+1,CELL_CENTER,user);
    575:       epsS = CalcSecInv(x,i,j,  CELL_CENTER,user);
    576:       epsE = CalcSecInv(x,i,j,  CELL_CORNER,user);
    577:       epsW = CalcSecInv(x,i-1,j,CELL_CORNER,user);
    578:     }
    579:   }
    580:   etaN = Viscosity(TN,epsN,dz*(j+1.0),param);
    581:   etaS = Viscosity(TS,epsS,dz*(j+0.0),param);
    582:   etaW = Viscosity(TW,epsW,dz*(j+0.5),param);
    583:   etaE = Viscosity(TE,epsE,dz*(j+0.5),param);

    585:   dPdz  = (x[j+1][i].p - x[j][i].p)/dz;
    586:   dwdzN = etaN * (x[j+1][i].w - x[j][i].w)/dz;
    587:   dwdzS = etaS * (x[j][i].w - x[j-1][i].w)/dz;
    588:   if (i==ilim) dwdxE = etaE * (x[j][i].u   - x[j+1][i].u)/dz;
    589:   else         dwdxE = etaE * (x[j][i+1].w - x[j][i].w)  /dx;
    590:   dwdxW = 2.0*etaW * (x[j][i].w - x[j][i-1].w)/dx;

    592:   /* Z-MOMENTUM */
    593:   residual = -dPdz                 /* constant viscosity terms */
    594:              +(dwdzN - dwdzS)/dz
    595:              +(dwdxE - dwdxW)/dx;

    597:   if (param->ivisc!=VISC_CONST) {
    598:     dudzE = etaE * (x[j+1][i].u - x[j][i].u)/dz;
    599:     dudzW = etaW * (x[j+1][i-1].u - x[j][i-1].u)/dz;

    601:     residual += (dwdzN - dwdzS)/dz + (dudzE - dudzW)/dx;
    602:   }

    604:   return residual;
    605: }

    607: /*---------------------------------------------------------------------*/
    610: /*  computes the residual of eqn (2) above */
    611: PETSC_STATIC_INLINE PetscScalar ContinuityResidual(Field **x, PetscInt i, PetscInt j, AppCtx *user)
    612: /*---------------------------------------------------------------------*/
    613: {
    614:   GridInfo    *grid =user->grid;
    615:   PetscScalar uE,uW,wN,wS,dudx,dwdz;

    617:   uW = x[j][i-1].u; uE = x[j][i].u; dudx = (uE - uW)/grid->dx;
    618:   wS = x[j-1][i].w; wN = x[j][i].w; dwdz = (wN - wS)/grid->dz;

    620:   return dudx + dwdz;
    621: }

    623: /*---------------------------------------------------------------------*/
    626: /*  computes the residual of eqn (3) above */
    627: PETSC_STATIC_INLINE PetscScalar EnergyResidual(Field **x, PetscInt i, PetscInt j, AppCtx *user)
    628: /*---------------------------------------------------------------------*/
    629: {
    630:   Parameter   *param=user->param;
    631:   GridInfo    *grid =user->grid;
    632:   PetscScalar dx    = grid->dx, dz=grid->dz;
    633:   PetscInt    ilim  =grid->ni-1, jlim=grid->nj-1, jlid=grid->jlid;
    634:   PetscScalar TE, TN, TS, TW, residual;
    635:   PetscScalar uE,uW,wN,wS;
    636:   PetscScalar fN,fS,fE,fW,dTdxW,dTdxE,dTdzN,dTdzS;

    638:   dTdzN = (x[j+1][i].T - x[j][i].T)  /dz;
    639:   dTdzS = (x[j][i].T   - x[j-1][i].T)/dz;
    640:   dTdxE = (x[j][i+1].T - x[j][i].T)  /dx;
    641:   dTdxW = (x[j][i].T   - x[j][i-1].T)/dx;

    643:   residual = ((dTdzN - dTdzS)/dz + /* diffusion term */
    644:               (dTdxE - dTdxW)/dx)*dx*dz/param->peclet;

    646:   if (j<=jlid && i>=j) {
    647:     /* don't advect in the lid */
    648:     return residual;
    649:   } else if (i<j) {
    650:     /* beneath the slab sfc */
    651:     uW = uE = param->cb;
    652:     wS = wN = param->sb;
    653:   } else {
    654:     /* advect in the slab and wedge */
    655:     uW = x[j][i-1].u; uE = x[j][i].u;
    656:     wS = x[j-1][i].w; wN = x[j][i].w;
    657:   }

    659:   if (param->adv_scheme==ADVECT_FV || i==ilim-1 || j==jlim-1 || i==1 || j==1) {
    660:     /* finite volume advection */
    661:     TS = (x[j][i].T + x[j-1][i].T)/2.0;
    662:     TN = (x[j][i].T + x[j+1][i].T)/2.0;
    663:     TE = (x[j][i].T + x[j][i+1].T)/2.0;
    664:     TW = (x[j][i].T + x[j][i-1].T)/2.0;
    665:     fN = wN*TN*dx; fS = wS*TS*dx;
    666:     fE = uE*TE*dz; fW = uW*TW*dz;

    668:   } else {
    669:     /* Fromm advection scheme */
    670:     fE =     (uE *(-x[j][i+2].T + 5.0*(x[j][i+1].T+x[j][i].T)-x[j][i-1].T)/8.0
    671:               - PetscAbsScalar(uE)*(-x[j][i+2].T + 3.0*(x[j][i+1].T-x[j][i].T)+x[j][i-1].T)/8.0)*dz;
    672:     fW =     (uW *(-x[j][i+1].T + 5.0*(x[j][i].T+x[j][i-1].T)-x[j][i-2].T)/8.0
    673:               - PetscAbsScalar(uW)*(-x[j][i+1].T + 3.0*(x[j][i].T-x[j][i-1].T)+x[j][i-2].T)/8.0)*dz;
    674:     fN =     (wN *(-x[j+2][i].T + 5.0*(x[j+1][i].T+x[j][i].T)-x[j-1][i].T)/8.0
    675:               - PetscAbsScalar(wN)*(-x[j+2][i].T + 3.0*(x[j+1][i].T-x[j][i].T)+x[j-1][i].T)/8.0)*dx;
    676:     fS =     (wS *(-x[j+1][i].T + 5.0*(x[j][i].T+x[j-1][i].T)-x[j-2][i].T)/8.0
    677:               - PetscAbsScalar(wS)*(-x[j+1][i].T + 3.0*(x[j][i].T-x[j-1][i].T)+x[j-2][i].T)/8.0)*dx;
    678:   }

    680:   residual -= (fE - fW + fN - fS);

    682:   return residual;
    683: }

    685: /*---------------------------------------------------------------------*/
    688: /*  computes the shear stress---used on the boundaries */
    689: PETSC_STATIC_INLINE PetscScalar ShearStress(Field **x, PetscInt i, PetscInt j, PetscInt ipos, AppCtx *user)
    690: /*---------------------------------------------------------------------*/
    691: {
    692:   Parameter   *param=user->param;
    693:   GridInfo    *grid =user->grid;
    694:   PetscInt    ilim  =grid->ni-1, jlim=grid->nj-1;
    695:   PetscScalar uN, uS, wE, wW;

    697:   if (j<=grid->jlid || i<j || i==ilim || j==jlim) return EPS_ZERO;

    699:   if (ipos==CELL_CENTER) { /* on cell center */

    701:     wE = WInterp(x,i,j-1);
    702:     if (i==j) {
    703:       wW = param->sb;
    704:       uN = param->cb;
    705:     } else {
    706:       wW = WInterp(x,i-1,j-1);
    707:       uN = UInterp(x,i-1,j);
    708:     }
    709:     if (j==grid->jlid+1) uS = 0.0;
    710:     else                 uS = UInterp(x,i-1,j-1);

    712:   } else { /* on cell corner */

    714:     uN = x[j+1][i].u;         uS = x[j][i].u;
    715:     wW = x[j][i].w;           wE = x[j][i+1].w;

    717:   }

    719:   return (uN-uS)/grid->dz + (wE-wW)/grid->dx;
    720: }

    722: /*---------------------------------------------------------------------*/
    725: /*  computes the normal stress---used on the boundaries */
    726: PETSC_STATIC_INLINE PetscScalar XNormalStress(Field **x, PetscInt i, PetscInt j, PetscInt ipos, AppCtx *user)
    727: /*---------------------------------------------------------------------*/
    728: {
    729:   Parameter   *param=user->param;
    730:   GridInfo    *grid =user->grid;
    731:   PetscScalar dx    = grid->dx, dz=grid->dz;
    732:   PetscInt    ilim  =grid->ni-1, jlim=grid->nj-1, ivisc;
    733:   PetscScalar epsC  =0.0, etaC, TC, uE, uW, pC, z_scale;
    734:   if (i<j || j<=grid->jlid) return EPS_ZERO;

    736:   ivisc=param->ivisc;  z_scale = param->z_scale;

    738:   if (ipos==CELL_CENTER) { /* on cell center */

    740:     TC = param->potentialT * x[j][i].T * exp((j-0.5)*dz*z_scale);
    741:     if (ivisc>=VISC_DISL) epsC = CalcSecInv(x,i,j,CELL_CENTER,user);
    742:     etaC = Viscosity(TC,epsC,dz*j,param);

    744:     uW = x[j][i-1].u;   uE = x[j][i].u;
    745:     pC = x[j][i].p;

    747:   } else { /* on cell corner */
    748:     if (i==ilim || j==jlim) return EPS_ZERO;

    750:     TC = param->potentialT * TInterp(x,i,j) * exp(j*dz*z_scale);
    751:     if (ivisc>=VISC_DISL) epsC = CalcSecInv(x,i,j,CELL_CORNER,user);
    752:     etaC = Viscosity(TC,epsC,dz*(j+0.5),param);

    754:     if (i==j) uW = param->sb;
    755:     else      uW = UInterp(x,i-1,j);
    756:     uE = UInterp(x,i,j); pC = PInterp(x,i,j);
    757:   }

    759:   return 2.0*etaC*(uE-uW)/dx - pC;
    760: }

    762: /*---------------------------------------------------------------------*/
    765: /*  computes the normal stress---used on the boundaries */
    766: PETSC_STATIC_INLINE PetscScalar ZNormalStress(Field **x, PetscInt i, PetscInt j, PetscInt ipos, AppCtx *user)
    767: /*---------------------------------------------------------------------*/
    768: {
    769:   Parameter   *param=user->param;
    770:   GridInfo    *grid =user->grid;
    771:   PetscScalar dz    =grid->dz;
    772:   PetscInt    ilim  =grid->ni-1, jlim=grid->nj-1, ivisc;
    773:   PetscScalar epsC  =0.0, etaC, TC;
    774:   PetscScalar pC, wN, wS, z_scale;
    775:   if (i<j || j<=grid->jlid) return EPS_ZERO;

    777:   ivisc=param->ivisc;  z_scale = param->z_scale;

    779:   if (ipos==CELL_CENTER) { /* on cell center */

    781:     TC = param->potentialT * x[j][i].T * exp((j-0.5)*dz*z_scale);
    782:     if (ivisc>=VISC_DISL) epsC = CalcSecInv(x,i,j,CELL_CENTER,user);
    783:     etaC = Viscosity(TC,epsC,dz*j,param);
    784:     wN   = x[j][i].w; wS = x[j-1][i].w; pC = x[j][i].p;

    786:   } else { /* on cell corner */
    787:     if ((i==ilim) || (j==jlim)) return EPS_ZERO;

    789:     TC = param->potentialT * TInterp(x,i,j) * exp(j*dz*z_scale);
    790:     if (ivisc>=VISC_DISL) epsC = CalcSecInv(x,i,j,CELL_CORNER,user);
    791:     etaC = Viscosity(TC,epsC,dz*(j+0.5),param);
    792:     if (i==j) wN = param->sb;
    793:     else      wN = WInterp(x,i,j);
    794:     wS = WInterp(x,i,j-1); pC = PInterp(x,i,j);
    795:   }

    797:   return 2.0*etaC*(wN-wS)/dz - pC;
    798: }

    800: /*---------------------------------------------------------------------*/

    802: /*=====================================================================
    803:   INITIALIZATION, POST-PROCESSING AND OUTPUT FUNCTIONS
    804:   =====================================================================*/

    806: /*---------------------------------------------------------------------*/
    809: /* initializes the problem parameters and checks for
    810:    command line changes */
    811: PetscErrorCode SetParams(Parameter *param, GridInfo *grid)
    812: /*---------------------------------------------------------------------*/
    813: {
    814:   PetscErrorCode ierr, ierr_out=0;
    815:   PetscReal      SEC_PER_YR                    = 3600.00*24.00*365.2500;
    816:   PetscReal      PI                            = 3.14159265358979323846;
    817:   PetscReal      alpha_g_on_cp_units_inverse_km=4.0e-5*9.8;

    819:   /* domain geometry */
    820:   param->slab_dip    = 45.0;
    821:   param->width       = 320.0;                                              /* km */
    822:   param->depth       = 300.0;                                              /* km */
    823:   param->lid_depth   = 35.0;                                               /* km */
    824:   param->fault_depth = 35.0;                                               /* km */

    826:   PetscOptionsGetReal(NULL,"-slab_dip",&(param->slab_dip),NULL);
    827:   PetscOptionsGetReal(NULL,"-width",&(param->width),NULL);
    828:   PetscOptionsGetReal(NULL,"-depth",&(param->depth),NULL);
    829:   PetscOptionsGetReal(NULL,"-lid_depth",&(param->lid_depth),NULL);
    830:   PetscOptionsGetReal(NULL,"-fault_depth",&(param->fault_depth),NULL);

    832:   param->slab_dip = param->slab_dip*PI/180.0;                    /* radians */

    834:   /* grid information */
    835:   PetscOptionsGetInt(NULL, "-jfault",&(grid->jfault),NULL);
    836:   grid->ni = 82;
    837:   PetscOptionsGetInt(NULL, "-ni",&(grid->ni),NULL);

    839:   grid->dx            = param->width/((double)(grid->ni-2));               /* km */
    840:   grid->dz            = grid->dx*tan(param->slab_dip);                     /* km */
    841:   grid->nj            = (PetscInt)(param->depth/grid->dz + 3.0);         /* gridpoints*/
    842:   param->depth        = grid->dz*(grid->nj-2);                             /* km */
    843:   grid->inose         = 0;                                          /* gridpoints*/
    844:   PetscOptionsGetInt(NULL,"-inose",&(grid->inose),NULL);
    845:   grid->bx            = DMDA_BOUNDARY_NONE;
    846:   grid->by            = DMDA_BOUNDARY_NONE;
    847:   grid->stencil       = DMDA_STENCIL_BOX;
    848:   grid->dof           = 4;
    849:   grid->stencil_width = 2;
    850:   grid->mglevels      = 1;

    852:   /* boundary conditions */
    853:   param->pv_analytic = PETSC_FALSE;
    854:   param->ibound      = BC_NOSTRESS;
    855:   PetscOptionsGetInt(NULL,"-ibound",&(param->ibound),NULL);

    857:   /* physical constants */
    858:   param->slab_velocity = 5.0;               /* cm/yr */
    859:   param->slab_age      = 50.0;              /* Ma */
    860:   param->lid_age       = 50.0;              /* Ma */
    861:   param->kappa         = 0.7272e-6;         /* m^2/sec */
    862:   param->potentialT    = 1300.0;            /* degrees C */

    864:   PetscOptionsGetReal(NULL,"-slab_velocity",&(param->slab_velocity),NULL);
    865:   PetscOptionsGetReal(NULL,"-slab_age",&(param->slab_age),NULL);
    866:   PetscOptionsGetReal(NULL,"-lid_age",&(param->lid_age),NULL);
    867:   PetscOptionsGetReal(NULL,"-kappa",&(param->kappa),NULL);
    868:   PetscOptionsGetReal(NULL,"-potentialT",&(param->potentialT),NULL);

    870:   /* viscosity */
    871:   param->ivisc        = 3;                  /* 0=isovisc, 1=difn creep, 2=disl creep, 3=full */
    872:   param->eta0         = 1e24;               /* Pa-s */
    873:   param->visc_cutoff  = 0.0;                /* factor of eta_0 */
    874:   param->continuation = 1.0;

    876:   /* constants for diffusion creep */
    877:   param->diffusion.A     = 1.8e7;             /* Pa-s */
    878:   param->diffusion.n     = 1.0;               /* dim'less */
    879:   param->diffusion.Estar = 375e3;             /* J/mol */
    880:   param->diffusion.Vstar = 5e-6;              /* m^3/mol */

    882:   /* constants for param->dislocationocation creep */
    883:   param->dislocation.A     = 2.8969e4;        /* Pa-s */
    884:   param->dislocation.n     = 3.5;             /* dim'less */
    885:   param->dislocation.Estar = 530e3;           /* J/mol */
    886:   param->dislocation.Vstar = 14e-6;           /* m^3/mol */

    888:   PetscOptionsGetInt(NULL, "-ivisc",&(param->ivisc),NULL);
    889:   PetscOptionsGetReal(NULL,"-visc_cutoff",&(param->visc_cutoff),NULL);

    891:   param->output_ivisc = param->ivisc;

    893:   PetscOptionsGetInt(NULL,"-output_ivisc",&(param->output_ivisc),NULL);
    894:   PetscOptionsGetReal(NULL,"-vstar",&(param->dislocation.Vstar),NULL);

    896:   /* output options */
    897:   param->quiet      = PETSC_FALSE;
    898:   param->param_test = PETSC_FALSE;

    900:   PetscOptionsHasName(NULL,"-quiet",&(param->quiet));
    901:   PetscOptionsHasName(NULL,"-test",&(param->param_test));
    902:   PetscOptionsGetString(NULL,"-file",param->filename,PETSC_MAX_PATH_LEN,&(param->output_to_file));

    904:   /* advection */
    905:   param->adv_scheme = ADVECT_FROMM;       /* advection scheme: 0=finite vol, 1=Fromm */

    907:   PetscOptionsGetInt(NULL,"-adv_scheme",&(param->adv_scheme),NULL);

    909:   /* misc. flags */
    910:   param->stop_solve    = PETSC_FALSE;
    911:   param->interrupted   = PETSC_FALSE;
    912:   param->kspmon        = PETSC_FALSE;
    913:   param->toggle_kspmon = PETSC_FALSE;

    915:   /* derived parameters for slab angle */
    916:   param->sb = sin(param->slab_dip);
    917:   param->cb = cos(param->slab_dip);
    918:   param->c  =  param->slab_dip*param->sb/(param->slab_dip*param->slab_dip-param->sb*param->sb);
    919:   param->d  = (param->slab_dip*param->cb-param->sb)/(param->slab_dip*param->slab_dip-param->sb*param->sb);

    921:   /* length, velocity and time scale for non-dimensionalization */
    922:   param->L = PetscMin(param->width,param->depth);               /* km */
    923:   param->V = param->slab_velocity/100.0/SEC_PER_YR;             /* m/sec */

    925:   /* other unit conversions and derived parameters */
    926:   param->scaled_width = param->width/param->L;                  /* dim'less */
    927:   param->scaled_depth = param->depth/param->L;                  /* dim'less */
    928:   param->lid_depth    = param->lid_depth/param->L;              /* dim'less */
    929:   param->fault_depth  = param->fault_depth/param->L;            /* dim'less */
    930:   grid->dx            = grid->dx/param->L;                      /* dim'less */
    931:   grid->dz            = grid->dz/param->L;                      /* dim'less */
    932:   grid->jlid          = (PetscInt)(param->lid_depth/grid->dz);       /* gridcells */
    933:   grid->jfault        = (PetscInt)(param->fault_depth/grid->dz);     /* gridcells */
    934:   param->lid_depth    = grid->jlid*grid->dz;                    /* dim'less */
    935:   param->fault_depth  = grid->jfault*grid->dz;                  /* dim'less */
    936:   grid->corner        = grid->jlid+1;                           /* gridcells */
    937:   param->peclet       = param->V                                /* m/sec */
    938:                         * param->L*1000.0                       /* m */
    939:                         / param->kappa;                         /* m^2/sec */
    940:   param->z_scale = param->L * alpha_g_on_cp_units_inverse_km;
    941:   param->skt     = PetscSqrtReal(param->kappa*param->slab_age*SEC_PER_YR);
    942:   PetscOptionsGetReal(NULL,"-peclet",&(param->peclet),NULL);

    944:   return ierr_out;
    945: }

    947: /*---------------------------------------------------------------------*/
    950: /*  prints a report of the problem parameters to stdout */
    951: PetscErrorCode ReportParams(Parameter *param, GridInfo *grid)
    952: /*---------------------------------------------------------------------*/
    953: {
    954:   PetscErrorCode ierr, ierr_out=0;
    955:   char           date[30];
    956:   PetscReal      PI = 3.14159265358979323846;

    958:   PetscGetDate(date,30);

    960:   if (!(param->quiet)) {
    961:     PetscPrintf(PETSC_COMM_WORLD,"---------------------BEGIN ex30 PARAM REPORT-------------------\n");
    962:     /* PetscPrintf(PETSC_COMM_WORLD,"                   %s\n",&(date[0]));*/

    964:     PetscPrintf(PETSC_COMM_WORLD,"Domain: \n");
    965:     PetscPrintf(PETSC_COMM_WORLD,"  Width = %G km,         Depth = %G km\n",param->width,param->depth);
    966:     PetscPrintf(PETSC_COMM_WORLD,"  Slab dip = %G degrees,  Slab velocity = %G cm/yr\n",param->slab_dip*180.0/PI,param->slab_velocity);
    967:     PetscPrintf(PETSC_COMM_WORLD,"  Lid depth = %5.2f km,   Fault depth = %5.2f km\n",param->lid_depth*param->L,param->fault_depth*param->L);

    969:     PetscPrintf(PETSC_COMM_WORLD,"\nGrid: \n");
    970:     PetscPrintf(PETSC_COMM_WORLD,"  [ni,nj] = %D, %D       [dx,dz] = %G, %G km\n",grid->ni,grid->nj,grid->dx*param->L,grid->dz*param->L);
    971:     PetscPrintf(PETSC_COMM_WORLD,"  jlid = %3D              jfault = %3D \n",grid->jlid,grid->jfault);
    972:     PetscPrintf(PETSC_COMM_WORLD,"  Pe = %G\n",param->peclet);

    974:     PetscPrintf(PETSC_COMM_WORLD,"\nRheology:");
    975:     if (param->ivisc==VISC_CONST) {
    976:       PetscPrintf(PETSC_COMM_WORLD,"                 Isoviscous \n");
    977:       if (param->pv_analytic) {
    978:         PetscPrintf(PETSC_COMM_WORLD,"                          Pressure and Velocity prescribed! \n");
    979:       }
    980:     } else if (param->ivisc==VISC_DIFN) {
    981:       PetscPrintf(PETSC_COMM_WORLD,"                 Diffusion Creep (T-Dependent Newtonian) \n");
    982:       PetscPrintf(PETSC_COMM_WORLD,"                          Viscosity range: %G--%G Pa-sec \n",param->eta0,param->visc_cutoff*param->eta0);
    983:     } else if (param->ivisc==VISC_DISL) {
    984:       PetscPrintf(PETSC_COMM_WORLD,"                 Dislocation Creep (T-Dependent Non-Newtonian) \n");
    985:       PetscPrintf(PETSC_COMM_WORLD,"                          Viscosity range: %G--%G Pa-sec \n",param->eta0,param->visc_cutoff*param->eta0);
    986:     } else if (param->ivisc==VISC_FULL) {
    987:       PetscPrintf(PETSC_COMM_WORLD,"                 Full Rheology \n");
    988:       PetscPrintf(PETSC_COMM_WORLD,"                          Viscosity range: %G--%G Pa-sec \n",param->eta0,param->visc_cutoff*param->eta0);
    989:     } else {
    990:       PetscPrintf(PETSC_COMM_WORLD,"                 Invalid! \n");
    991:       ierr_out = 1;
    992:     }

    994:     PetscPrintf(PETSC_COMM_WORLD,"Boundary condition:");
    995:     if (param->ibound==BC_ANALYTIC) {
    996:       PetscPrintf(PETSC_COMM_WORLD,"       Isoviscous Analytic Dirichlet \n");
    997:     } else if (param->ibound==BC_NOSTRESS) {
    998:       PetscPrintf(PETSC_COMM_WORLD,"       Stress-Free (normal & shear stress)\n");
    999:     } else if (param->ibound==BC_EXPERMNT) {
    1000:       PetscPrintf(PETSC_COMM_WORLD,"       Experimental boundary condition \n");
    1001:     } else {
    1002:       PetscPrintf(PETSC_COMM_WORLD,"       Invalid! \n");
    1003:       ierr_out = 1;
    1004:     }

    1006:     if (param->output_to_file)
    1007: #if defined(PETSC_HAVE_MATLAB_ENGINE)
    1008:       PetscPrintf(PETSC_COMM_WORLD,"Output Destination:       Mat file \"%s\"\n",param->filename);
    1009: #else
    1010:       PetscPrintf(PETSC_COMM_WORLD,"Output Destination:       PETSc binary file \"%s\"\n",param->filename);
    1011: #endif
    1012:     if (param->output_ivisc != param->ivisc) {
    1013:       PetscPrintf(PETSC_COMM_WORLD,"                          Output viscosity: -ivisc %D\n",param->output_ivisc);
    1014:     }

    1016:     PetscPrintf(PETSC_COMM_WORLD,"---------------------END ex30 PARAM REPORT---------------------\n");
    1017:   }
    1018:   if (param->param_test) PetscEnd();
    1019:   return ierr_out;
    1020: }

    1022: /* ------------------------------------------------------------------- */
    1025: /*  generates an inital guess using the analytic solution for isoviscous
    1026:     corner flow */
    1027: PetscErrorCode Initialize(DM da)
    1028: /* ------------------------------------------------------------------- */
    1029: {
    1030:   AppCtx         *user;
    1031:   Parameter      *param;
    1032:   GridInfo       *grid;
    1033:   PetscInt       i,j,is,js,im,jm;
    1035:   Field          **x;
    1036:   Vec            Xguess;

    1038:   /* Get the fine grid */
    1039:   DMGetApplicationContext(da,&user);
    1040:   Xguess = user->Xguess;
    1041:   param  = user->param;
    1042:   grid   = user->grid;
    1043:   DMDAGetCorners(da,&is,&js,NULL,&im,&jm,NULL);
    1044:   DMDAVecGetArray(da,Xguess,(void**)&x);

    1046:   /* Compute initial guess */
    1047:   for (j=js; j<js+jm; j++) {
    1048:     for (i=is; i<is+im; i++) {
    1049:       if (i<j)                x[j][i].u = param->cb;
    1050:       else if (j<=grid->jlid) x[j][i].u = 0.0;
    1051:       else                    x[j][i].u = HorizVelocity(i,j,user);

    1053:       if (i<=j)               x[j][i].w = param->sb;
    1054:       else if (j<=grid->jlid) x[j][i].w = 0.0;
    1055:       else                    x[j][i].w = VertVelocity(i,j,user);

    1057:       if (i<j || j<=grid->jlid) x[j][i].p = 0.0;
    1058:       else                      x[j][i].p = Pressure(i,j,user);

    1060:       x[j][i].T = PetscMin(grid->dz*(j-0.5),1.0);
    1061:     }
    1062:   }

    1064:   /* Restore x to Xguess */
    1065:   DMDAVecRestoreArray(da,Xguess,(void**)&x);

    1067:   return 0;
    1068: }

    1070: /*---------------------------------------------------------------------*/
    1073: /*  controls output to a file */
    1074: PetscErrorCode DoOutput(SNES snes, PetscInt its)
    1075: /*---------------------------------------------------------------------*/
    1076: {
    1077:   AppCtx         *user;
    1078:   Parameter      *param;
    1079:   GridInfo       *grid;
    1080:   PetscInt       ivt;
    1082:   PetscMPIInt    rank;
    1083:   PetscViewer    viewer;
    1084:   Vec            res, pars;
    1085:   MPI_Comm       comm;
    1086:   DM             da;

    1088:   SNESGetDM(snes,&da);
    1089:   DMGetApplicationContext(da,&user);
    1090:   param = user->param;
    1091:   grid  = user->grid;
    1092:   ivt   = param->ivisc;

    1094:   param->ivisc = param->output_ivisc;

    1096:   /* compute final residual and final viscosity/strain rate fields */
    1097:   SNESGetFunction(snes, &res, NULL, NULL);
    1098:   ViscosityField(da, user->x, user->Xguess);

    1100:   /* get the communicator and the rank of the processor */
    1101:   PetscObjectGetComm((PetscObject)snes, &comm);
    1102:   MPI_Comm_rank(comm, &rank);

    1104:   if (param->output_to_file) { /* send output to binary file */
    1105:     VecCreate(comm, &pars);
    1106:     if (!rank) { /* on processor 0 */
    1107:       VecSetSizes(pars, 20, PETSC_DETERMINE);
    1108:       VecSetFromOptions(pars);
    1109:       VecSetValue(pars,0, (PetscScalar)(grid->ni),INSERT_VALUES);
    1110:       VecSetValue(pars,1, (PetscScalar)(grid->nj),INSERT_VALUES);
    1111:       VecSetValue(pars,2, (PetscScalar)(grid->dx),INSERT_VALUES);
    1112:       VecSetValue(pars,3, (PetscScalar)(grid->dz),INSERT_VALUES);
    1113:       VecSetValue(pars,4, (PetscScalar)(param->L),INSERT_VALUES);
    1114:       VecSetValue(pars,5, (PetscScalar)(param->V),INSERT_VALUES);
    1115:       /* skipped 6 intentionally */
    1116:       VecSetValue(pars,7, (PetscScalar)(param->slab_dip),INSERT_VALUES);
    1117:       VecSetValue(pars,8, (PetscScalar)(grid->jlid),INSERT_VALUES);
    1118:       VecSetValue(pars,9, (PetscScalar)(param->lid_depth),INSERT_VALUES);
    1119:       VecSetValue(pars,10,(PetscScalar)(grid->jfault),INSERT_VALUES);
    1120:       VecSetValue(pars,11,(PetscScalar)(param->fault_depth),INSERT_VALUES);
    1121:       VecSetValue(pars,12,(PetscScalar)(param->potentialT),INSERT_VALUES);
    1122:       VecSetValue(pars,13,(PetscScalar)(param->ivisc),INSERT_VALUES);
    1123:       VecSetValue(pars,14,(PetscScalar)(param->visc_cutoff),INSERT_VALUES);
    1124:       VecSetValue(pars,15,(PetscScalar)(param->ibound),INSERT_VALUES);
    1125:       VecSetValue(pars,16,(PetscScalar)(its),INSERT_VALUES);
    1126:     } else { /* on some other processor */
    1127:       VecSetSizes(pars, 0, PETSC_DETERMINE);
    1128:       VecSetFromOptions(pars);
    1129:     }
    1130:     VecAssemblyBegin(pars); VecAssemblyEnd(pars);

    1132:     /* create viewer */
    1133: #if defined(PETSC_HAVE_MATLAB_ENGINE)
    1134:     PetscViewerMatlabOpen(PETSC_COMM_WORLD,param->filename,FILE_MODE_WRITE,&viewer);
    1135: #else
    1136:     PetscViewerBinaryOpen(PETSC_COMM_WORLD,param->filename,FILE_MODE_WRITE,&viewer);
    1137: #endif

    1139:     /* send vectors to viewer */
    1140:     PetscObjectSetName((PetscObject)res,"res");
    1141:     VecView(res,viewer);
    1142:     PetscObjectSetName((PetscObject)user->x,"out");
    1143:     VecView(user->x, viewer);
    1144:     PetscObjectSetName((PetscObject)(user->Xguess),"aux");
    1145:     VecView(user->Xguess, viewer);
    1146:     StressField(da); /* compute stress fields */
    1147:     PetscObjectSetName((PetscObject)(user->Xguess),"str");
    1148:     VecView(user->Xguess, viewer);
    1149:     PetscObjectSetName((PetscObject)pars,"par");
    1150:     VecView(pars, viewer);

    1152:     /* destroy viewer and vector */
    1153:     PetscViewerDestroy(&viewer);
    1154:     VecDestroy(&pars);
    1155:   }

    1157:   param->ivisc = ivt;
    1158:   return 0;
    1159: }

    1161: /* ------------------------------------------------------------------- */
    1164: /* Compute both the second invariant of the strain rate tensor and the viscosity, at both cell centers and cell corners */
    1165: PetscErrorCode ViscosityField(DM da, Vec X, Vec V)
    1166: /* ------------------------------------------------------------------- */
    1167: {
    1168:   AppCtx         *user;
    1169:   Parameter      *param;
    1170:   GridInfo       *grid;
    1171:   Vec            localX;
    1172:   Field          **v, **x;
    1173:   PassiveReal    eps, /* dx,*/ dz, T, epsC, TC;
    1174:   PetscInt       i,j,is,js,im,jm,ilim,jlim,ivt;

    1178:   DMGetApplicationContext(da,&user);
    1179:   param        = user->param;
    1180:   grid         = user->grid;
    1181:   ivt          = param->ivisc;
    1182:   param->ivisc = param->output_ivisc;

    1184:   DMGetLocalVector(da, &localX);
    1185:   DMGlobalToLocalBegin(da, X, INSERT_VALUES, localX);
    1186:   DMGlobalToLocalEnd(da, X, INSERT_VALUES, localX);
    1187:   DMDAVecGetArray(da,localX,(void**)&x);
    1188:   DMDAVecGetArray(da,V,(void**)&v);

    1190:   /* Parameters */
    1191:   /* dx = grid->dx; */ dz = grid->dz;

    1193:   ilim = grid->ni-1; jlim = grid->nj-1;

    1195:   /* Compute real temperature, strain rate and viscosity */
    1196:   DMDAGetCorners(da,&is,&js,NULL,&im,&jm,NULL);
    1197:   for (j=js; j<js+jm; j++) {
    1198:     for (i=is; i<is+im; i++) {
    1199:       T = PetscRealPart(param->potentialT * x[j][i].T * exp((j-0.5)*dz*param->z_scale));
    1200:       if (i<ilim && j<jlim) {
    1201:         TC = PetscRealPart(param->potentialT * TInterp(x,i,j) * exp(j*dz*param->z_scale));
    1202:       } else {
    1203:         TC = T;
    1204:       }
    1205:       eps  = PetscRealPart((CalcSecInv(x,i,j,CELL_CENTER,user)));
    1206:       epsC = PetscRealPart(CalcSecInv(x,i,j,CELL_CORNER,user));

    1208:       v[j][i].u = eps;
    1209:       v[j][i].w = epsC;
    1210:       v[j][i].p = Viscosity(T,eps,dz*(j-0.5),param);
    1211:       v[j][i].T = Viscosity(TC,epsC,dz*j,param);
    1212:     }
    1213:   }
    1214:   DMDAVecRestoreArray(da,V,(void**)&v);
    1215:   DMDAVecRestoreArray(da,localX,(void**)&x);
    1216:   DMRestoreLocalVector(da, &localX);

    1218:   param->ivisc = ivt;
    1219:   return(0);
    1220: }

    1222: /* ------------------------------------------------------------------- */
    1225: /* post-processing: compute stress everywhere */
    1226: PetscErrorCode StressField(DM da)
    1227: /* ------------------------------------------------------------------- */
    1228: {
    1229:   AppCtx         *user;
    1230:   PetscInt       i,j,is,js,im,jm;
    1232:   Vec            locVec;
    1233:   Field          **x, **y;

    1235:   DMGetApplicationContext(da,&user);

    1237:   /* Get the fine grid of Xguess and X */
    1238:   DMDAGetCorners(da,&is,&js,NULL,&im,&jm,NULL);
    1239:   DMDAVecGetArray(da,user->Xguess,(void**)&x);

    1241:   DMGetLocalVector(da, &locVec);
    1242:   DMGlobalToLocalBegin(da, user->x, INSERT_VALUES, locVec);
    1243:   DMGlobalToLocalEnd(da, user->x, INSERT_VALUES, locVec);
    1244:   DMDAVecGetArray(da,locVec,(void**)&y);

    1246:   /* Compute stress on the corner points */
    1247:   for (j=js; j<js+jm; j++) {
    1248:     for (i=is; i<is+im; i++) {
    1249:       x[j][i].u = ShearStress(y,i,j,CELL_CENTER,user);
    1250:       x[j][i].w = ShearStress(y,i,j,CELL_CORNER,user);
    1251:       x[j][i].p = XNormalStress(y,i,j,CELL_CENTER,user);
    1252:       x[j][i].T = ZNormalStress(y,i,j,CELL_CENTER,user);
    1253:     }
    1254:   }

    1256:   /* Restore the fine grid of Xguess and X */
    1257:   DMDAVecRestoreArray(da,user->Xguess,(void**)&x);
    1258:   DMDAVecRestoreArray(da,locVec,(void**)&y);
    1259:   DMRestoreLocalVector(da, &locVec);
    1260:   return 0;
    1261: }

    1263: /*=====================================================================
    1264:   UTILITY FUNCTIONS
    1265:   =====================================================================*/

    1267: /*---------------------------------------------------------------------*/
    1270: /* returns the velocity of the subducting slab and handles fault nodes
    1271:    for BC */
    1272: PETSC_STATIC_INLINE PassiveScalar SlabVel(char c, PetscInt i, PetscInt j, AppCtx *user)
    1273: /*---------------------------------------------------------------------*/
    1274: {
    1275:   Parameter *param = user->param;
    1276:   GridInfo  *grid  = user->grid;

    1278:   if (c=='U' || c=='u') {
    1279:     if (i<j-1) return param->cb;
    1280:     else if (j<=grid->jfault) return 0.0;
    1281:     else return param->cb;

    1283:   } else {
    1284:     if (i<j) return param->sb;
    1285:     else if (j<=grid->jfault) return 0.0;
    1286:     else return param->sb;
    1287:   }
    1288: }

    1290: /*---------------------------------------------------------------------*/
    1293: /*  solution to diffusive half-space cooling model for BC */
    1294: PETSC_STATIC_INLINE PassiveScalar PlateModel(PetscInt j, PetscInt plate, AppCtx *user)
    1295: /*---------------------------------------------------------------------*/
    1296: {
    1297:   Parameter     *param = user->param;
    1298:   PassiveScalar z;
    1299:   if (plate==PLATE_LID) z = (j-0.5)*user->grid->dz;
    1300:   else z = (j-0.5)*user->grid->dz*param->cb;  /* PLATE_SLAB */
    1301: #if defined(PETSC_HAVE_ERF)
    1302:   return (erf(PetscRealPart(z*param->L/2.0/param->skt)));
    1303: #else
    1304:   SETERRQ(PETSC_COMM_SELF,1,"erf() not available on this machine");
    1305: #endif
    1306: }

    1309: /* ------------------------------------------------------------------- */
    1312: /*  utility function */
    1313: PetscBool  OptionsHasName(const char pre[],const char name[])
    1314: /* ------------------------------------------------------------------- */
    1315: {
    1316:   PetscBool      retval;
    1318:   PetscOptionsHasName(pre,name,&retval);CHKERRABORT(PETSC_COMM_WORLD,ierr);
    1319:   return retval;
    1320: }

    1322: /*=====================================================================
    1323:   INTERACTIVE SIGNAL HANDLING
    1324:   =====================================================================*/

    1326: /* ------------------------------------------------------------------- */
    1329: PetscErrorCode SNESConverged_Interactive(SNES snes, PetscInt it,PetscReal xnorm, PetscReal snorm, PetscReal fnorm, SNESConvergedReason *reason, void *ctx)
    1330: /* ------------------------------------------------------------------- */
    1331: {
    1332:   AppCtx         *user  = (AppCtx*) ctx;
    1333:   Parameter      *param = user->param;
    1334:   KSP            ksp;

    1338:   if (param->interrupted) {
    1339:     param->interrupted = PETSC_FALSE;
    1340:     PetscPrintf(PETSC_COMM_WORLD,"USER SIGNAL: exiting SNES solve. \n");
    1341:     *reason = SNES_CONVERGED_FNORM_ABS;
    1342:     return(0);
    1343:   } else if (param->toggle_kspmon) {
    1344:     param->toggle_kspmon = PETSC_FALSE;

    1346:     SNESGetKSP(snes, &ksp);

    1348:     if (param->kspmon) {
    1349:       KSPMonitorCancel(ksp);

    1351:       param->kspmon = PETSC_FALSE;
    1352:       PetscPrintf(PETSC_COMM_WORLD,"USER SIGNAL: deactivating ksp singular value monitor. \n");
    1353:     } else {
    1354:       KSPMonitorSet(ksp,KSPMonitorSingularValue,NULL,NULL);

    1356:       param->kspmon = PETSC_TRUE;
    1357:       PetscPrintf(PETSC_COMM_WORLD,"USER SIGNAL: activating ksp singular value monitor. \n");
    1358:     }
    1359:   }
    1360:   PetscFunctionReturn(SNESConvergedDefault(snes,it,xnorm,snorm,fnorm,reason,ctx));
    1361: }

    1363: /* ------------------------------------------------------------------- */
    1364: #include <signal.h>
    1367: PetscErrorCode InteractiveHandler(int signum, void *ctx)
    1368: /* ------------------------------------------------------------------- */
    1369: {
    1370:   AppCtx    *user  = (AppCtx*) ctx;
    1371:   Parameter *param = user->param;

    1373:   if (signum == SIGILL) {
    1374:     param->toggle_kspmon = PETSC_TRUE;
    1375: #if !defined(PETSC_MISSING_SIGCONT)
    1376:   } else if (signum == SIGCONT) {
    1377:     param->interrupted = PETSC_TRUE;
    1378: #endif
    1379: #if !defined(PETSC_MISSING_SIGURG)
    1380:   } else if (signum == SIGURG) {
    1381:     param->stop_solve = PETSC_TRUE;
    1382: #endif
    1383:   }
    1384:   return 0;
    1385: }

    1387: /*---------------------------------------------------------------------*/
    1390: /*  main call-back function that computes the processor-local piece
    1391:     of the residual */
    1392: PetscErrorCode FormFunctionLocal(DMDALocalInfo *info,Field **x,Field **f,void *ptr)
    1393: /*---------------------------------------------------------------------*/
    1394: {
    1395:   AppCtx      *user  = (AppCtx*)ptr;
    1396:   Parameter   *param = user->param;
    1397:   GridInfo    *grid  = user->grid;
    1398:   PetscScalar mag_w, mag_u;
    1399:   PetscInt    i,j,mx,mz,ilim,jlim;
    1400:   PetscInt    is,ie,js,je,ibound;    /* ,ivisc */

    1403:   /* Define global and local grid parameters */
    1404:   mx   = info->mx;     mz   = info->my;
    1405:   ilim = mx-1;         jlim = mz-1;
    1406:   is   = info->xs;     ie   = info->xs+info->xm;
    1407:   js   = info->ys;     je   = info->ys+info->ym;

    1409:   /* Define geometric and numeric parameters */
    1410:   /* ivisc = param->ivisc; */ ibound = param->ibound;

    1412:   for (j=js; j<je; j++) {
    1413:     for (i=is; i<ie; i++) {

    1415:       /************* X-MOMENTUM/VELOCITY *************/
    1416:       if (i<j) f[j][i].u = x[j][i].u - SlabVel('U',i,j,user);
    1417:       else if (j<=grid->jlid || (j<grid->corner+grid->inose && i<grid->corner+grid->inose)) {
    1418:         /* in the lithospheric lid */
    1419:         f[j][i].u = x[j][i].u - 0.0;
    1420:       } else if (i==ilim) {
    1421:         /* on the right side boundary */
    1422:         if (ibound==BC_ANALYTIC) {
    1423:           f[j][i].u = x[j][i].u - HorizVelocity(i,j,user);
    1424:         } else {
    1425:           f[j][i].u = XNormalStress(x,i,j,CELL_CENTER,user) - EPS_ZERO;
    1426:         }

    1428:       } else if (j==jlim) {
    1429:         /* on the bottom boundary */
    1430:         if (ibound==BC_ANALYTIC) {
    1431:           f[j][i].u = x[j][i].u - HorizVelocity(i,j,user);
    1432:         } else if (ibound==BC_NOSTRESS) {
    1433:           f[j][i].u = XMomentumResidual(x,i,j,user);
    1434:         } else {
    1435:           /* experimental boundary condition */
    1436:         }

    1438:       } else {
    1439:         /* in the mantle wedge */
    1440:         f[j][i].u = XMomentumResidual(x,i,j,user);
    1441:       }

    1443:       /************* Z-MOMENTUM/VELOCITY *************/
    1444:       if (i<=j) {
    1445:         f[j][i].w = x[j][i].w - SlabVel('W',i,j,user);

    1447:       } else if (j<=grid->jlid || (j<grid->corner+grid->inose && i<grid->corner+grid->inose)) {
    1448:         /* in the lithospheric lid */
    1449:         f[j][i].w = x[j][i].w - 0.0;

    1451:       } else if (j==jlim) {
    1452:         /* on the bottom boundary */
    1453:         if (ibound==BC_ANALYTIC) {
    1454:           f[j][i].w = x[j][i].w - VertVelocity(i,j,user);
    1455:         } else {
    1456:           f[j][i].w = ZNormalStress(x,i,j,CELL_CENTER,user) - EPS_ZERO;
    1457:         }

    1459:       } else if (i==ilim) {
    1460:         /* on the right side boundary */
    1461:         if (ibound==BC_ANALYTIC) {
    1462:           f[j][i].w = x[j][i].w - VertVelocity(i,j,user);
    1463:         } else if (ibound==BC_NOSTRESS) {
    1464:           f[j][i].w = ZMomentumResidual(x,i,j,user);
    1465:         } else {
    1466:           /* experimental boundary condition */
    1467:         }

    1469:       } else {
    1470:         /* in the mantle wedge */
    1471:         f[j][i].w =  ZMomentumResidual(x,i,j,user);
    1472:       }

    1474:       /************* CONTINUITY/PRESSURE *************/
    1475:       if (i<j || j<=grid->jlid || (j<grid->corner+grid->inose && i<grid->corner+grid->inose)) {
    1476:         /* in the lid or slab */
    1477:         f[j][i].p = x[j][i].p;

    1479:       } else if ((i==ilim || j==jlim) && ibound==BC_ANALYTIC) {
    1480:         /* on an analytic boundary */
    1481:         f[j][i].p = x[j][i].p - Pressure(i,j,user);

    1483:       } else {
    1484:         /* in the mantle wedge */
    1485:         f[j][i].p = ContinuityResidual(x,i,j,user);
    1486:       }

    1488:       /************* TEMPERATURE *************/
    1489:       if (j==0) {
    1490:         /* on the surface */
    1491:         f[j][i].T = x[j][i].T + x[j+1][i].T + PetscMax(PetscRealPart(x[j][i].T),0.0);

    1493:       } else if (i==0) {
    1494:         /* slab inflow boundary */
    1495:         f[j][i].T = x[j][i].T - PlateModel(j,PLATE_SLAB,user);

    1497:       } else if (i==ilim) {
    1498:         /* right side boundary */
    1499:         mag_u = 1.0 - PetscPowRealInt((1.0-PetscMax(PetscMin(PetscRealPart(x[j][i-1].u)/param->cb,1.0),0.0)), 5);
    1500:         f[j][i].T = x[j][i].T - mag_u*x[j-1][i-1].T - (1.0-mag_u)*PlateModel(j,PLATE_LID,user);

    1502:       } else if (j==jlim) {
    1503:         /* bottom boundary */
    1504:         mag_w = 1.0 - PetscPowRealInt((1.0-PetscMax(PetscMin(PetscRealPart(x[j-1][i].w)/param->sb,1.0),0.0)), 5);
    1505:         f[j][i].T = x[j][i].T - mag_w*x[j-1][i-1].T - (1.0-mag_w);

    1507:       } else {
    1508:         /* in the mantle wedge */
    1509:         f[j][i].T = EnergyResidual(x,i,j,user);
    1510:       }
    1511:     }
    1512:   }
    1513:   return(0);
    1514: }