# 
# @file    multi_example2.cs
# @brief   multi create example
# @author  Sarah Keating
# @author  Frank Bergmann
# 
# <!--------------------------------------------------------------------------
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#     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
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# Copyright (C) 2006-2008 by the California Institute of Technology,
#     Pasadena, CA, USA 
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# Copyright (C) 2002-2005 jointly by the following organizations:
#     1. California Institute of Technology, Pasadena, CA, USA
#     2. Japan Science and Technology Agency, Japan
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# This library is free software; you can redistribute it and/or modify it
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# 

from libsbml import * 

sbmlns = SBMLNamespaces(3,1,"multi",1);

# create the document

document = SBMLDocument(sbmlns);

# set the required attribute to True
docPlug = document.getPlugin("multi");
docPlug.setRequired(True);


# create the Model

model=document.createModel();

# create a compartment

c = model.createCompartment();
c.setId("membrane");
c.setConstant(True);

# set the multi attribute isType via the compartmentPlugin
compPlug = c.getPlugin("multi");
compPlug.setIsType(True);

# create species
s = model.createSpecies();
s.setId("s1");
s.setCompartment("membrane");
s.setBoundaryCondition(False);
s.setHasOnlySubstanceUnits(False);
s.setConstant(False);

# create reaction
r = model.createReaction();
r.setId("r1");
r.setFast(False);
r.setReversible(False);

# createReactant
sr = r.createReactant();
sr.setId("sr1");
sr.setSpecies("s1");
sr.setConstant(False);

kl = r.createKineticLaw();

ci = ASTNode(AST_NAME);
ci.setName("s1");
astPlugin = ci.getPlugin("multi");
astPlugin.setSpeciesReference("r1");

ci1 = ASTNode(AST_NAME);
astPlugin1 = ci1.getPlugin("multi");
astPlugin1.setRepresentationType("sum");
ci1.setName("s1");

math = ASTNode(AST_TIMES);
math.addChild(ci);
math.addChild(ci1);

kl.setMath(math);

writeSBML(document,"multi_example2.xml");

