pappso::OboPsiModTerm Class Reference

#include <obopsimod.h>

Public Member Functions
bool	isValid () const

Public Attributes
QString	m_accession
QString	m_name
QString	m_psiModLabel
QString	m_psiMsLabel
QString	m_diffFormula
QString	m_origin
pappso_double	m_diffMono

Private Member Functions
void	parseLine (const QString &line)
void	clearTerm ()

Private Attributes
friend	OboPsiMod

Static Private Attributes
static QRegExp	m_firstParse
static QRegExp	m_findExactPsiModLabel
static QRegExp	m_findRelatedPsiMsLabel

Detailed Description

Definition at line 56 of file obopsimod.h.

Member Function Documentation

clearTerm()

void pappso::OboPsiModTerm::clearTerm ( )

private

Definition at line 119 of file obopsimod.cpp.

{
  m_accession   = "";
  m_name        = "";
  m_psiModLabel = "";
  m_diffFormula = "";
  m_diffMono    = 0;
  m_origin      = "";
}

References m_accession, m_diffFormula, m_diffMono, m_name, m_origin, and m_psiModLabel.

Referenced by pappso::OboPsiMod::parse().

isValid()

bool pappso::OboPsiModTerm::isValid ( ) const

inline

Definition at line 79 of file obopsimod.h.

parseLine()

void pappso::OboPsiModTerm::parseLine ( const QString &  line )

private

Definition at line 51 of file obopsimod.cpp.

{
  // qDebug() << "OboPsiModTerm::parseLine begin " << line;
  // id: MOD:00007
  if(m_firstParse.exactMatch(line))
    {
      QStringList pline = m_firstParse.capturedTexts();
      // qDebug() << "OboPsiModTerm::parseLine match " << pline[0] << pline[1];
      if(pline[1] == "id")
        {
          m_accession = pline[2].trimmed();
          // qDebug() << "OboPsiModTerm::parseLine accession = " << m_accession;
        }
      else if(pline[1] == "name")
        {
          m_name = pline[2].trimmed();
          // qDebug() << "OboPsiModTerm::parseLine accession = " << m_accession;
        }
      else if(pline[1] == "xref")
        {
          // xref: DiffMono: "1.007276"
          if(m_firstParse.exactMatch(pline[2]))
            {
              QStringList psecond = m_firstParse.capturedTexts();
              if(psecond[1] == "DiffMono")
                {
                  m_diffMono = psecond[2].replace("\"", "").toDouble();
                  // qDebug() << "OboPsiModTerm::parseLine m_diffMono = " <<
                  // m_diffMono;
                }
              else if(psecond[1] == "DiffFormula")
                {
                  m_diffFormula = psecond[2].trimmed().replace("\"", "");
                  // qDebug() << "OboPsiModTerm::parseLine m_diffFormula = |" <<
                  // m_diffFormula<<"|";
                }
              else if(psecond[1] == "Origin")
                {
                  m_origin =
                    psecond[2].trimmed().replace("\"", "").replace(",", "");
                  // qDebug() << "OboPsiModTerm::parseLine m_diffFormula = |" <<
                  // m_diffFormula<<"|";
                }
            }
        }
      else if(pline[1] == "synonym")
        {
          // synonym: "Se(S)Res" EXACT PSI-MOD-label []
          if(m_findExactPsiModLabel.exactMatch(pline[2]))
            {
              m_psiModLabel =
                m_findExactPsiModLabel.capturedTexts()[1].trimmed().replace(
                  "\"", "");
              // qDebug() << "OboPsiModTerm::parseLine m_psiModLabel = |" <<
              // m_psiModLabel<<"|";
            }
          else if(m_findRelatedPsiMsLabel.exactMatch(pline[2]))
            {
              m_psiMsLabel =
                m_findRelatedPsiMsLabel.capturedTexts()[1].trimmed().replace(
                  "\"", "");
              // qDebug() << "OboPsiModTerm::parseLine m_psiModLabel = |" <<
              // m_psiModLabel<<"|";
            }
        }
    }
}

References m_accession, m_diffFormula, m_diffMono, m_findExactPsiModLabel, m_findRelatedPsiMsLabel, m_firstParse, m_name, m_origin, m_psiModLabel, and m_psiMsLabel.

Referenced by pappso::OboPsiMod::parse().

Member Data Documentation

m_accession

QString pappso::OboPsiModTerm::m_accession

Definition at line 69 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_diffFormula

QString pappso::OboPsiModTerm::m_diffFormula

Definition at line 73 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_diffMono

pappso_double pappso::OboPsiModTerm::m_diffMono

Definition at line 76 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_findExactPsiModLabel

QRegExp pappso::OboPsiModTerm::m_findExactPsiModLabel

staticprivate

Definition at line 65 of file obopsimod.h.

Referenced by parseLine().

m_findRelatedPsiMsLabel

QRegExp pappso::OboPsiModTerm::m_findRelatedPsiMsLabel

staticprivate

Definition at line 66 of file obopsimod.h.

Referenced by parseLine().

m_firstParse

QRegExp pappso::OboPsiModTerm::m_firstParse

staticprivate

Definition at line 64 of file obopsimod.h.

Referenced by parseLine().

m_name

QString pappso::OboPsiModTerm::m_name

Definition at line 70 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_origin

QString pappso::OboPsiModTerm::m_origin

Definition at line 74 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_psiModLabel

QString pappso::OboPsiModTerm::m_psiModLabel

Definition at line 71 of file obopsimod.h.

Referenced by clearTerm(), and parseLine().

m_psiMsLabel

QString pappso::OboPsiModTerm::m_psiMsLabel

Definition at line 72 of file obopsimod.h.

Referenced by parseLine().

OboPsiMod

friend pappso::OboPsiModTerm::OboPsiMod

private

Definition at line 58 of file obopsimod.h.

---

The documentation for this class was generated from the following files:

• pappsomspp/obo/obopsimod.h
• pappsomspp/obo/obopsimod.cpp