pappso::MorpheusScore Class Reference

#include <morpheusscore.h>

Public Member Functions
	MorpheusScore (const MassSpectrum &spectrum, pappso::PeptideSp peptideSp, unsigned int parent_charge, PrecisionPtr precision, std::vector< PeptideIon > ion_list, RawFragmentationMode fragmentation_mode)
	~MorpheusScore ()
pappso::pappso_double	getMorpheusScore () const

Private Attributes
pappso::pappso_double	_morpheus_score

Detailed Description

Definition at line 61 of file morpheusscore.h.

Constructor & Destructor Documentation

MorpheusScore()

pappso::MorpheusScore::MorpheusScore	(	const MassSpectrum &	spectrum,
		pappso::PeptideSp	peptideSp,
		unsigned int	parent_charge,
		PrecisionPtr	precision,
		std::vector< PeptideIon >	ion_list,
		RawFragmentationMode	fragmentation_mode
	)

Definition at line 60 of file morpheusscore.cpp.

    {
      sum_intensities += it_spectrum->y;
      MzRange peak_range(it_spectrum->x, precision);
 
      while((it_theoretical != it_theoretical_end) &&
            (*it_theoretical < peak_range.lower()))
        {
          it_theoretical++;
        }
      while((it_theoretical != it_theoretical_end) &&
            peak_range.contains(*it_theoretical))
        {
          sum_matched_intensities += it_spectrum->y;
          number_of_matched_peaks++;
          it_theoretical++;
        }
      it_spectrum++;
    }
  while(it_spectrum != it_spectrum_end)
    {
      sum_intensities += it_spectrum->y;
      it_spectrum++;
    }
 
 
  // compute the sum of matching peak intensities
 
  // morpheus score = number of matched peaks + matching intensities ratio
 
  _morpheus_score = (pappso_double)number_of_matched_peaks +
                    (sum_matched_intensities / sum_intensities);
 
  qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
}
 
MorpheusScore::~MorpheusScore()
{
}
 
pappso::pappso_double
MorpheusScore::getMorpheusScore() const
{
  return _morpheus_score;
}
} // namespace pappso

~MorpheusScore()

pappso::MorpheusScore::~MorpheusScore

(

)

Definition at line 136 of file morpheusscore.cpp.

Member Function Documentation

getMorpheusScore()

pappso::pappso_double pappso::MorpheusScore::getMorpheusScore

(

)

const

Definition at line 141 of file morpheusscore.cpp.

Member Data Documentation

_morpheus_score

pappso::pappso_double pappso::MorpheusScore::_morpheus_score

private

Definition at line 96 of file morpheusscore.h.

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The documentation for this class was generated from the following files:

• pappsomspp/psm/morpheus/morpheusscore.h
• pappsomspp/psm/morpheus/morpheusscore.cpp