Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: jalview
Upstream-Contact: jalview-discuss@jalview.org
Files-Excluded: jalview/j11lib
                jalview/j8lib
                jalview/j11digestonly
                jalview/j8digestonly
                jalview/examples/biojson-doc
                jalview/examples/javascript
                jalview/examples/jmol
                jalview/examples/example_biojs.html
                jalview/examples/embeddedWJmol.html
                jalview/examples/index.html
                jalview/utils
                jalview/getdown
Source: The tarball is made by deleting the jars in the j8* and j11* dirs,
        the utils directory as we will rely on the Debian-packaged tools, and
        some folders in the examples directory, of which copyright is a bit
        confusing. We also delete some files with very long lines in the
        examples/ folder. getdown is a tool to update the software at runtime,
        which we don't want to enable.

Files: *
Copyright: 2014-2020 The Jalview Authors
License: GPL-3+

Files: src/com/github/reinert/jjschema/Attributes.java
Copyright: 2014 Danilo Reinert <daniloreinert@growbit.com>
License: Apache-2.0 or LGPL-3+

Files: src/com/stevesoft/*
Copyright: 2001 Steven R. Brandt
License: LGPL-3+

Files: src/ext/edu/*
Copyright: 2006 The Regents of the University of California.
License: special
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
   1. Redistributions of source code must retain the above copyright
      notice, this list of conditions, and the following disclaimer.
   2. Redistributions in binary form must reproduce the above
      copyright notice, this list of conditions, and the following
      disclaimer in the documentation and/or other materials provided
      with the distribution.
   3. Redistributions must acknowledge that this software was
      originally developed by the UCSF Computer Graphics Laboratory
      under support by the NIH National Center for Research Resources,
      grant P41-RR01081.
 .
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY
 EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
 PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS BE LIABLE
 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
 OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
 BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
 WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
 OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
 EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Comment: This is similar to BSD-3-clause but the third clause has been changed
 for redistribution acknowledgement.

Files: src/jalview/ext/android/*
Copyright: 2006 The Android Open Source Project
           2014-2020 The Jalview Authors
License: Apache-2.0 and GPL-3+

Files: src/jalview/gui/AquaInternalFrameManager.java
Copyright: 2011-2012 Oracle and/or its affiliates.
License: GPL-2

Files: test/junit/*
Copyright: 2004-2012 Sebastian Dietrich <Sebastian.Dietrich@e-movimento.com>
License: Apache-2.0

Files: debian/*
Copyright: 2009-2011 Vincent Fourmond <fourmond@debian.org>
           2020      Pierre Gruet <pgtdebian@free.fr>
License: GPL-3+

License: Apache-2.0
 On Debian systems the full text of the Apache-2.0 license can be found in
 /usr/share/common-licenses/Apache-2.0.

License: GPL-2
  On Debian systems, the complete text of the GNU General Public
  License (version 2) can be found in  `/usr/share/common-licenses/GPL-2'.

License: GPL-3+
  On Debian systems, the complete text of the GNU General Public
  License version 3 can be found in  `/usr/share/common-licenses/GPL-3'.

License: LGPL-3+
  On Debian systems, the complete text of the GNU Lesser General Public
  License version 3 can be found in  `/usr/share/common-licenses/LGPL-3'.
