# This file is autogenerated via make -f debian/rules dist.  Do not edit!
Source: debian-med
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
XSBC-Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: misc
Priority: extra
Build-Depends-Indep: blends-dev (>= 0.6.92.3)
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/blends/projects/med.git
Vcs-Git: https://anonscm.debian.org/git/blends/projects/med.git

Package: med-tasks
Architecture: all
Depends: tasksel
Description: Debian Med tasks for tasksel
 This package provides Debian Med tasks in tasksel.
 .
 These tasks are described in detail at
 http://debian-med.alioth.debian.org/tasks/

Package: med-config
Architecture: all
Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.15)
Conflicts: med-common
Replaces: med-common
Provides: med-common
Description: Debian Med general config package
 This package provides the basic infrastructure of all metapackages assembled
 by the Debian Med team.
 .
 This metapackage provides common features shared between the different
 metapackages of the project. Moreover it introduces a method to handle a
 'med' system users group using debconf.
 .
 The Debian Med Project include metapackages for different tasks, which are:
  * applications for microbiological research and support for development of
    biological applications
  * cloud computing in microbiological research
  * drug databases
  * dental surgery practice
  * epidemiology and medical statistics
  * image processing and support for imaging application development
  * pharmacological research
  * radiation oncology, diagnostic imaging and related fields
  * medical practice
  * psychological research and practice
  * rehabilitation
  * typesetting and publishing
  * miscellaneous tools
 .
 Each task is represented by a metapackage. Metapackages do not contain
 executable programs, but rather dependencies from other packages. This way
 you will conveniently get all free medical software which is available for
 Debian by simply installing the relevant metapackage

Package: med-all
Section: metapackages
Architecture: all
Recommends: med-bio,
 med-bio-dev,
 med-statistics
Suggests: med-cloud,
 med-data,
 med-dental,
 med-epi,
 med-his,
 med-imaging,
 med-imaging-dev,
 med-laboratory,
 med-oncology,
 med-pharmacy,
 med-physics,
 med-practice,
 med-psychology,
 med-rehabilitation,
 med-tools,
 med-typesetting
Description: Default selection of tasks for Debian Med
 This package is part of the Debian Med Pure Blend and installs all
 tasks for a default installation of this blend.

Package: med-bio
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: abacas,
 acedb-other,
 acedb-other-belvu,
 acedb-other-dotter,
 adapterremoval,
 adun-core,
 aegean,
 aevol,
 alien-hunter,
 alter-sequence-alignment,
 altree,
 amap-align,
 ampliconnoise,
 andi,
 anfo,
 aragorn,
 arden,
 ariba,
 art-nextgen-simulation-tools,
 artemis,
 artfastqgenerator,
 atac,
 augustus,
 autodock,
 autodock-vina,
 autogrid,
 axe-demultiplexer,
 baitfisher,
 ballview,
 bamtools,
 barrnap,
 bcftools,
 beagle,
 beast2-mcmc,
 bedops,
 bedtools,
 berkeley-express,
 bio-eagle,
 bio-rainbow,
 bio-tradis,
 blasr,
 bowtie,
 bowtie2,
 boxshade,
 brig,
 bwa,
 cassiopee,
 cd-hit,
 cdbfasta,
 cgview,
 chimeraslayer,
 circlator,
 circos,
 clearcut,
 clonalframe,
 clustalo,
 clustalw,
 codonw,
 concavity,
 conservation-code,
 crac,
 cutadapt,
 daligner,
 dascrubber,
 datamash,
 dawg,
 dazzdb,
 deepnano,
 dialign,
 dialign-tx,
 diamond-aligner,
 dindel,
 discosnp,
 disulfinder,
 dnaclust,
 dssp,
 dwgsim,
 ea-utils,
 ecopcr,
 edtsurf,
 embassy-domainatrix,
 embassy-domalign,
 embassy-domsearch,
 emboss,
 examl,
 exonerate,
 falcon,
 fastahack,
 fastaq,
 fastdnaml,
 fastlink,
 fastml,
 fastqc,
 fastqtl,
 fasttree,
 fastx-toolkit,
 ffindex,
 figtree,
 filo,
 fitgcp,
 flexbar,
 fml-asm,
 freebayes,
 freecontact,
 fsa,
 fsm-lite,
 gamgi,
 garli,
 garlic,
 gasic,
 gbrowse,
 gdpc,
 genometools,
 gff2aplot,
 gff2ps,
 ghemical,
 giira,
 glam2,
 graphlan,
 grinder,
 gromacs,
 gubbins,
 gwama,
 harvest-tools,
 hhsuite,
 hilive,
 hisat2,
 hmmer,
 hmmer2,
 hyphy-mpi | hyphy-pt,
 hyphygui,
 idba,
 indelible,
 infernal,
 ipig,
 iqtree,
 iva,
 jaligner,
 jalview,
 jellyfish,
 jmodeltest,
 jmol,
 kalign,
 khmer,
 kineticstools,
 king-probe,
 kissplice,
 kmc,
 kmer,
 kraken,
 lambda-align,
 last-align,
 leaff,
 lefse,
 librg-utils-perl,
 libvcflib-tools,
 logol-bin,
 loki,
 ltrsift,
 macs,
 macsyfinder,
 maffilter,
 mafft,
 mapdamage,
 mapsembler2,
 maq,
 maqview,
 mash,
 massxpert,
 mauve-aligner,
 melting,
 meryl,
 metaphlan2,
 metastudent,
 mhap,
 microbegps,
 microbiomeutil,
 minia,
 miniasm,
 minimap,
 mipe,
 mira-assembler,
 mlv-smile,
 mothur,
 mptp,
 mrbayes,
 mummer,
 murasaki,
 muscle,
 mustang,
 nanopolish,
 nast-ier,
 ncbi-blast+,
 ncbi-blast+-legacy,
 ncbi-entrez-direct,
 ncbi-epcr,
 ncbi-seg,
 ncbi-tools-bin,
 ncbi-tools-x11,
 ncl-tools,
 ncoils,
 neobio,
 njplot,
 norsnet,
 norsp,
 openms,
 paleomix,
 paraclu,
 parsinsert,
 parsnp,
 pbalign,
 pbbarcode,
 pbdagcon,
 pbgenomicconsensus,
 pbh5tools,
 pbhoney,
 pbjelly,
 pbsim,
 pbsuite,
 pdb2pqr,
 perlprimer,
 perm,
 pftools,
 phipack,
 phybin,
 phylip,
 phyml,
 physamp,
 phyutility,
 picard-tools,
 piler,
 pirs,
 placnet,
 plasmidomics,
 plast,
 plink,
 plink1.9,
 plip,
 poa,
 populations,
 poretools,
 prank,
 predictnls,
 predictprotein,
 prime-phylo,
 primer3,
 proalign,
 probabel,
 probalign,
 probcons,
 proda,
 prodigal,
 profbval,
 profisis,
 profnet-bval,
 profnet-chop,
 profnet-con,
 profnet-isis,
 profnet-md,
 profnet-norsnet,
 profnet-prof,
 profnet-snapfun,
 profphd,
 profphd-net,
 profphd-utils,
 proftmb,
 progressivemauve,
 proteinortho,
 prottest,
 pycorrfit,
 pymol,
 pynast,
 pyscanfcs,
 python-cogent,
 python3-biomaj3,
 qcumber,
 qiime,
 qtltools,
 r-bioc-annotate,
 r-bioc-biostrings,
 r-bioc-cummerbund,
 r-bioc-deseq2,
 r-bioc-dnacopy,
 r-bioc-ebseq,
 r-bioc-edger,
 r-bioc-genefilter,
 r-bioc-geneplotter,
 r-bioc-gviz,
 r-bioc-hilbertvis,
 r-bioc-limma,
 r-bioc-mergeomics,
 r-bioc-metagenomeseq,
 r-bioc-phyloseq,
 r-bioc-rtracklayer,
 r-cran-adegenet,
 r-cran-adephylo,
 r-cran-ape,
 r-cran-bio3d,
 r-cran-distory,
 r-cran-genabel,
 r-cran-phangorn,
 r-cran-pscbs,
 r-cran-qtl,
 r-cran-rotl,
 r-cran-seqinr,
 r-cran-treescape,
 r-cran-vegan,
 r-other-mott-happy.hbrem,
 radiant,
 rambo-k,
 rapmap,
 rasmol,
 rate4site,
 raxml,
 ray,
 rdp-alignment,
 rdp-classifier,
 rdp-readseq,
 readseq,
 reapr,
 relion-bin | relion-bin+mpi,
 relion-bin+gui | relion-bin+mpi+gui,
 repeatmasker-recon,
 reprof,
 rna-star,
 rnahybrid,
 roary,
 roguenarok,
 rsem,
 rtax,
 runcircos-gui,
 saint,
 salmon,
 samtools,
 scrm,
 scythe,
 seer,
 seq-gen,
 seqan-apps,
 seqprep,
 seqsero,
 seqtk,
 sga,
 sibsim4,
 sickle,
 sigma-align,
 sim4,
 sim4db,
 smalt,
 smithwaterman,
 smrtanalysis,
 snap,
 snap-aligner,
 sniffles,
 snp-sites,
 snpomatic,
 soapdenovo,
 soapdenovo2,
 sortmerna,
 spaced,
 spades,
 sprai,
 squizz,
 sra-toolkit,
 srst2,
 ssake,
 sspace,
 ssw-align,
 stacks,
 staden,
 staden-io-lib-utils,
 subread,
 suitename,
 sumaclust,
 sumatra,
 sumtrees,
 surankco,
 swarm,
 t-coffee,
 tabix,
 tantan,
 theseus,
 tigr-glimmer,
 tm-align,
 tnseq-transit,
 tophat,
 topp,
 toppred,
 transdecoder,
 transrate-tools,
 transtermhp,
 tree-puzzle | tree-ppuzzle,
 treeviewx,
 trimmomatic,
 trinityrnaseq,
 uc-echo,
 ugene,
 varna,
 vcftools,
 velvet | velvet-long,
 velvetoptimiser,
 vsearch,
 wigeon,
 wise,
 zalign
Suggests: abyss,
 acacia,
 adun.app,
 amos-assembler,
 amoscmp,
 apollo,
 arachne,
 arb,
 asap,
 autodocktools,
 axparafit,
 axpcoords,
 bagpipe,
 bambus,
 beads,
 beast-mcmc,
 biceps,
 big-blast,
 bigsdb,
 biomaj,
 biomaj-watcher,
 bitseq,
 blat,
 blimps-utils,
 blixem,
 blobology,
 btk-core,
 cactus,
 caftools,
 cain,
 canu,
 cap3,
 ccs,
 cdna-db,
 cinema,
 clonalorigin,
 clustalx,
 cluster3,
 cmap,
 cnvkit,
 coalesce,
 compclust,
 condetri,
 contrafold,
 contralign,
 coot,
 copycat,
 crossbow,
 crux-toolkit,
 cufflinks,
 cytoscape,
 das-proserver,
 dazzle,
 decipher,
 e-hive,
 ecell,
 eigensoft,
 elph,
 embassy-phylip,
 emboss-explorer,
 emmax,
 emperor,
 ensembl,
 est-db,
 estferret,
 estscan,
 euler-sr,
 euler2,
 exabayes,
 exalt,
 excavator,
 fasta,
 fasta3,
 ffp,
 figaro,
 finex,
 fluctuate,
 forester,
 forge,
 galaxy,
 gassst,
 gatk,
 gbioseq,
 gbrowse-syn,
 genemark,
 genesplicer,
 genetrack,
 genezilla,
 genographer,
 gentle,
 getdata,
 glimmerhmm,
 gmap,
 gmv,
 grabix,
 grogui,
 haploview,
 hawkeye,
 hexamer,
 hilbertvisgui,
 htqc,
 igv,
 inspect,
 jbrowse,
 jigsaw,
 jstreeview,
 kclust,
 kempbasu,
 lagan,
 lamarc,
 lofreq,
 logomat-m,
 lucy,
 mach-haplotyper,
 mage2tab,
 maker2,
 malt,
 manta,
 martj,
 maude,
 maxd,
 melting-gui,
 meme,
 mesquite,
 metabit,
 metarep,
 metastudent-data,
 metastudent-data-2,
 metastudent-data-3,
 mgltools-cadd,
 mgltools-pmv,
 mgltools-vision,
 migrate,
 minimus,
 mirbase,
 mobyle,
 mobyle-programs,
 mobyle-tutorials,
 modeller,
 molekel,
 mosaik-aligner,
 mpsqed,
 mrs,
 msatfinder,
 mugsy,
 mummergpu,
 mview,
 nanocall,
 nextsv,
 ngila,
 ngsqctoolkit,
 nw-align,
 oases,
 obitools,
 obo-edit,
 oligoarrayaux,
 omegamap,
 operondb,
 pal2nal,
 paml,
 partigene,
 partitionfinder,
 patman,
 patristic,
 pcma,
 pfaat,
 phagefinder,
 phast,
 phpphylotree,
 phylographer,
 phylophlan,
 phyloviz-core,
 phylowin,
 pipasic,
 plato,
 profit,
 prokka,
 prot4est,
 pscan-tfbs,
 psipred,
 psortb,
 pssh2,
 pyrophosphate-tools,
 python-orange,
 python-reaper,
 qtlcart,
 qualimap,
 r-bioc-annotationhub,
 r-bioc-aroma.light,
 r-bioc-ensembldb,
 r-bioc-go.db,
 r-bioc-savr,
 r-cran-boolnet,
 r-cran-metamix,
 r-cran-pheatmap,
 r-cran-qqman,
 r-cran-rentrez,
 r-other-apmswapp,
 r-other-valdar-bagphenotype.library,
 raccoon,
 raster3d,
 raxml-ng,
 rbs-finder,
 recombine,
 repeatmasker,
 rmblast,
 roadtrips,
 roche454ace2caf,
 rose,
 rosetta,
 rsat,
 sambamba,
 sap,
 science-workflow,
 seaview,
 segemehl,
 sequenceconverter.app,
 sift,
 situs,
 snpeff,
 sparta,
 spice,
 splitstree,
 spread-phy,
 ssaha,
 strap,
 strap-base,
 tacg,
 taverna,
 taxinspector,
 tetra,
 tide,
 tigr-glimmer-mg,
 trace2dbest,
 tracetuner,
 treebuilder3d,
 treetime,
 treeview,
 tripal,
 trnascan-se,
 tvc,
 twain,
 unc-fish,
 uniprime,
 varmatch,
 varscan,
 vienna-rna,
 vmd,
 x-tandem-pipeline,
 zodiac-zeden
Description: Debian Med bioinformatics packages
 This metapackage will install Debian packages for use in molecular biology,
 structural biology and other biological sciences.

Package: med-bio-dev
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: bio-tradis,
 bioperl,
 bioperl-run,
 biosquid,
 libace-perl,
 libai-fann-perl,
 libbambamc-dev,
 libbamtools-dev,
 libbio-coordinate-perl,
 libbio-das-lite-perl,
 libbio-eutilities-perl,
 libbio-graphics-perl,
 libbio-mage-perl,
 libbio-mage-utils-perl,
 libbio-primerdesigner-perl,
 libbiococoa-dev,
 libbiod-dev,
 libbiojava-java,
 libbiojava4-java,
 libblasr-dev,
 libbpp-core-dev,
 libbpp-phyl-dev,
 libbpp-phyl-omics-dev,
 libbpp-popgen-dev,
 libbpp-qt-dev,
 libbpp-raa-dev,
 libbpp-seq-dev,
 libbpp-seq-omics-dev,
 libchado-perl,
 libconsensuscore-dev,
 libdivsufsort-dev,
 libfast5-dev,
 libfastahack-dev,
 libffindex0-dev,
 libfml-dev,
 libfreecontact-dev,
 libfreecontact-perl,
 libgenome-1.3-dev,
 libgenome-model-tools-music-perl,
 libgenome-perl,
 libgenometools0-dev,
 libgff-dev,
 libgkarrays-dev,
 libgo-perl,
 libhmsbeagle-dev,
 libhts-dev,
 libhtsjdk-java,
 libjebl2-java,
 libjloda-java,
 libkmer-dev,
 libmems-1.6-dev,
 libminimap-dev,
 libmuscle-3.7-dev,
 libncbi-vdb-dev,
 libncbi6-dev,
 libncl-dev,
 libngs-java,
 libngs-sdk-dev,
 libnhgri-blastall-perl,
 libopenms-dev,
 libpal-java,
 libpbbam-dev,
 libpbdata-dev,
 libpbihdf-dev,
 libpbseq-dev,
 libqes-dev,
 librcsb-core-wrapper0-dev,
 librdp-taxonomy-tree-java,
 librelion-dev,
 librg-blast-parser-perl,
 librg-reprof-bundle-perl,
 librostlab-blast0-dev,
 librostlab3-dev,
 libsbml5-dev,
 libsmithwaterman-dev,
 libsnp-sites1-dev,
 libsort-key-top-perl,
 libsrf-dev,
 libssm-dev,
 libssw-dev,
 libssw-java,
 libstaden-read-dev,
 libswiss-perl,
 libtabixpp-dev,
 libtfbs-perl,
 libvcflib-dev,
 libvibrant6-dev,
 libzerg-perl,
 libzerg0-dev,
 mcl,
 pyfai,
 python-biom-format,
 python-cobra,
 python-cogent,
 python-corepywrap,
 python-freecontact,
 python-htseq,
 python-kineticstools,
 python-pbcommand,
 python-pbcore,
 python-pbh5tools,
 python-pysam,
 python-rdkit,
 python-screed,
 python3-biomaj3 | python-biomaj3,
 python3-biopython | python-biopython,
 python3-biotools | python-biotools,
 python3-csb | python-csb,
 python3-cutadapt | python-cutadapt,
 python3-dendropy | python-dendropy,
 python3-fast5 | python-fast5,
 python3-gffutils,
 python3-intervaltree-bio | python-intervaltree-bio,
 python3-ngs | python-ngs,
 python3-pbconsensuscore | python-pbconsensuscore,
 python3-pybedtools,
 python3-pyfaidx | python-pyfaidx,
 python3-pymummer,
 python3-pyvcf | python-pyvcf,
 python3-ruffus | python-ruffus,
 python3-skbio,
 r-bioc-biobase,
 r-cran-genetics,
 r-cran-haplo.stats,
 r-cran-phylobase,
 r-cran-rncl,
 r-cran-rnexml,
 ruby-bio,
 ruby-crb-blast,
 sbmltoolbox,
 seqan-dev
Suggests: bioclipse,
 libbam-dev,
 libdisorder-dev,
 libforester-java,
 libfreecontact-doc,
 libgff-perl,
 libgtextutils-dev,
 libpbcopper-dev,
 libqcpp-dev,
 libroadrunner-dev,
 librostlab-blast-doc,
 librostlab-doc,
 libseqlib-dev,
 libswarm2-dev,
 mgltools-networkeditor,
 mgltools-pybabel,
 mgltools-vision,
 octace-bioinfo,
 octave-bioinfo,
 python-bd2k,
 python-biopython-doc,
 python-bx,
 python-consensuscore2,
 python-hyphy,
 python-misopy,
 python-mmtk,
 python-pyfasta,
 python-pyflow,
 python-roadrunner,
 python3-bd2k,
 python3-biopython-sql | python-biopython-sql,
 python3-bx,
 python3-consensuscore2,
 python3-hyphy,
 python3-misopy,
 python3-pyfasta,
 r-bioc-affy,
 r-bioc-affyio,
 r-bioc-altcdfenvs,
 r-bioc-annotationdbi,
 r-bioc-biocgenerics,
 r-bioc-biomart,
 r-bioc-biomformat,
 r-bioc-biovizbase,
 r-bioc-bsgenome,
 r-bioc-genomeinfodb,
 r-bioc-genomicalignments,
 r-bioc-genomicfeatures,
 r-bioc-genomicranges,
 r-bioc-graph,
 r-bioc-hypergraph,
 r-bioc-iranges,
 r-bioc-makecdfenv,
 r-bioc-preprocesscore,
 r-bioc-rbgl,
 r-bioc-rsamtools,
 r-bioc-shortread,
 r-bioc-snpstats,
 r-bioc-variantannotation,
 r-bioc-xvector,
 r-cran-natserv,
 r-cran-rentrez,
 r-cran-rocr,
 ruby-rgfa
Description: Debian Med packages for development of bioinformatics applications
 This metapackage will install Debian packages which might be helpful
 for development of applications for biological research.

Package: med-cloud
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: acedb-other,
 aevol,
 alien-hunter,
 altree,
 amap-align,
 ampliconnoise,
 anfo,
 aragorn,
 arden,
 autodock,
 autodock-vina,
 autogrid,
 bamtools,
 bedtools,
 biomaj,
 bioperl,
 bioperl-run,
 biosquid,
 blast2,
 bowtie,
 bowtie2,
 boxshade,
 bwa,
 cain,
 cassiopee,
 cd-hit,
 cdbfasta,
 circos,
 clearcut,
 clonalframe,
 clustalo,
 clustalw,
 concavity,
 conservation-code,
 datamash,
 dialign,
 dialign-tx,
 discosnp,
 disulfinder,
 dnaclust,
 dssp,
 embassy-domainatrix,
 embassy-domalign,
 embassy-domsearch,
 emboss,
 exonerate,
 fastdnaml,
 fastlink,
 fastqc,
 fasttree,
 fastx-toolkit,
 filo,
 fitgcp,
 flexbar,
 freecontact,
 gasic,
 genometools,
 gff2aplot,
 gff2ps,
 giira,
 glam2,
 grinder,
 gromacs,
 hhsuite,
 hmmer,
 idba,
 infernal,
 jellyfish,
 kalign,
 kissplice,
 last-align,
 loki,
 macs,
 mafft,
 mapsembler2,
 maq,
 melting,
 minia,
 mipe,
 mira-assembler,
 mlv-smile,
 mothur,
 mrbayes,
 mummer,
 muscle,
 mustang,
 ncbi-epcr,
 ncbi-tools-bin,
 ncoils,
 neobio,
 paraclu,
 parsinsert,
 pdb2pqr,
 perm,
 phyml,
 phyutility,
 picard-tools,
 plink,
 poa,
 prank,
 prime-phylo,
 primer3,
 probabel,
 probcons,
 proda,
 prodigal,
 pynast,
 python-biopython,
 python-cogent,
 python3-biopython,
 qiime,
 r-bioc-edger,
 r-bioc-hilbertvis,
 r-cran-pvclust,
 r-cran-qtl,
 r-cran-vegan,
 r-other-mott-happy.hbrem,
 readseq,
 rnahybrid,
 rtax,
 samtools,
 seqan-apps,
 sibsim4,
 sigma-align,
 sim4,
 smalt,
 snap,
 soapdenovo,
 soapdenovo2,
 squizz,
 sra-toolkit,
 ssake,
 staden-io-lib-utils,
 t-coffee,
 tabix,
 theseus,
 tigr-glimmer,
 tophat,
 tree-puzzle | tree-ppuzzle,
 vcftools,
 velvet,
 wise,
 zalign
Suggests: abyss,
 bagpipe,
 cufflinks,
 embassy-phylip,
 gmap,
 r-other-valdar-bagphenotype.library,
 raster3d
Description: Debian Med bioinformatics applications usable in cloud computing
 This metapackage will install Debian packages related to molecular biology,
 structural biology and bioinformatics for use in life sciences, that do not
 depend on graphical toolkits and therefore can fit on system images for use
 in cloud computing clusters, where space can be limited.

Package: med-data
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: freediams,
 freemedforms-freedata,
 python-hl7
Suggests: drugref.org,
 sleepyhead
Description: Debian Med drug databases
 This metapackage will install free drug databases and related
 applications. The database can be accessed by any EMR using
 the application.

Package: med-dental
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: entangle,
 imagetooth,
 openmolar
Description: Debian Med packages related to dental practice
 This metapackage contains dependencies for a collection of software
 which might be helpful for dentists to manage their practice.

Package: med-epi
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: epigrass,
 r-cran-diagnosismed,
 r-cran-epi,
 r-cran-epibasix,
 r-cran-epicalc,
 r-cran-epir,
 r-cran-epitools,
 r-cran-seroincidence
Suggests: netepi-analysis,
 netepi-collection,
 r-cran-cmprsk,
 r-cran-lexrankr,
 r-cran-msm,
 r-cran-surveillance,
 repast,
 shiny-server,
 ushahidi
Description: Debian Med epidemiology related packages
 This metapackage will install tools that are useful in epidemiological
 research.  Several packages making use of the GNU R data language for
 statistical investigation.  It might be a good idea to read the paper
 "A short introduction to R for Epidemiology" at
 http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf

Package: med-his
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: fis-gtm,
 orthanc-wsi
Suggests: care2x,
 ewd-920,
 hkma-cms,
 ipath,
 openeyes,
 openmaxims,
 openmrs,
 oscar-mcmaster,
 patientos,
 tryton-modules-health,
 vista-foia,
 world-vista
Description: Debian Med suggestions for Hospital Information Systems
 This metapackage contains dependencies for software and that could
 be useful ro run a Hospital Information System.  While there is
 continuous work going on to package a ready to install system currently
 only preconditions are finished but hopefully helpful in hospitals
 anyway.

Package: med-imaging
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: aeskulap,
 amide,
 ants,
 bart,
 biosig-tools,
 camitk-imp,
 ctn,
 ctsim,
 dcm2niix,
 dcmtk,
 dicom3tools,
 dicomnifti,
 dicomscope,
 gdf-tools,
 ginkgocadx,
 gwyddion,
 imagej,
 imagevis3d,
 invesalius,
 ismrmrd-tools,
 itksnap,
 king,
 libgdcm-tools,
 medcon,
 mia-tools,
 mia-viewit,
 mialmpick,
 mriconvert,
 mricron,
 mrtrix,
 nifti-bin,
 openslide-tools,
 orthanc,
 orthanc-wsi,
 pixelmed-apps,
 plastimatch,
 python-dicom,
 python-nibabel,
 python-nipy,
 python-nipype,
 python-nitime,
 python-surfer,
 python-tifffile,
 sigviewer,
 sofa-apps,
 teem-apps,
 voxbo,
 vtk-dicom-tools,
 xmedcon
Suggests: afni,
 bart-view,
 bioimagesuite,
 bioimagexd,
 blox,
 brainvisa,
 caret,
 cdmedicpacs,
 cellprofiler,
 cmtk,
 connectomeviewer,
 conquest-common,
 conquest-dbase,
 conquest-mysql,
 conquest-postgres,
 conquest-sqlite,
 crea,
 dcm4chee,
 devide,
 dicom4j,
 dicoogle,
 drjekyll,
 dti-query,
 dtitk,
 ecg2png,
 eeglab,
 elastix,
 fiji,
 freesurfer,
 fsl,
 fslview,
 fw4spl,
 gimias,
 gofigure2,
 hid,
 imagemagick,
 imview,
 incf-nidash-oneclick-clients,
 insightapplications,
 isis,
 jemris,
 jist,
 kradview,
 libdcm4che-java,
 lipsia,
 maris,
 mayam,
 medisnap,
 mesa-test-tools,
 micromanager,
 minc-tools,
 mipav,
 miview,
 mni-autoreg,
 mni-colin27-nifti,
 mni-icbm152-nlin-2009,
 mni-n3,
 mrisim,
 omero,
 opendicom.net,
 openelectrophy,
 openmeeg-tools,
 opensourcepacs,
 openwalnut-qt4,
 orthanc-dicomweb,
 orthanc-imagej,
 orthanc-postgresql,
 orthanc-webviewer,
 paraview,
 piano,
 pngquant,
 pymeg,
 python-pyxid,
 science-workflow,
 slicer,
 stabilitycalc,
 stir,
 tempo,
 trimage,
 via-bin,
 visit,
 vmtk,
 volview,
 xnat
Description: Debian Med image processing and visualization packages
 This metapackage will install Debian packages which might be useful in
 medical image processing and visualization.
 .
 On one hand, it installs several packages supporting various image file
 formats and image management, like DICOM (Digital Imaging and
 Communications in Medicine) which is the de-facto standard for medical
 image management, and NIFTI. On the other hand, it provides a variety of
 software packages that can be used for visualization and for image processing
 - either from a graphical user interface, the command  line, or implemented in
 workflows.

Package: med-imaging-dev
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: cimg-dev,
 ctn-dev,
 gmic,
 libbart-dev,
 libbiosig-dev,
 libcamitk-dev,
 libcifti-dev,
 libcv-dev,
 libedf-dev,
 libgdcm2-dev,
 libgdf-dev,
 libgiftiio-dev,
 libinsighttoolkit4-dev,
 libismrmrd-dev,
 libmaxflow-dev,
 libmdc2-dev,
 libmia-2.4-dev,
 libmialm-dev,
 libmiaviewit-dev,
 libminc-dev,
 libnifti-dev,
 libodil0-dev,
 libopenigtlink-dev,
 libopenslide-dev,
 libopensurgsim-dev,
 libpapyrus3-dev,
 libteem-dev,
 libvigraimpex-dev,
 libvistaio-dev,
 libvolpack1-dev,
 libvtk-dicom-dev,
 libvtk6-dev,
 octave-bart,
 octave-gdf,
 python-casmoothing,
 python-cfflib,
 python-dicom,
 python-dipy,
 python-imageio,
 python-mia | python3-mia,
 python-mne,
 python-nibabel,
 python-nipy,
 python-nipype,
 python-nitime,
 python-openslide,
 python-pyxnat,
 python-vigra,
 r-cran-rniftilib
Suggests: emokit,
 igstk-examples,
 libbio-formats-java,
 libcamp-dev,
 libctk-dev,
 libeegdev-dev,
 libfreeimage-dev,
 libics-dev,
 libigstk4-dev,
 liblimereg-dev,
 libmni-perllib-perl,
 libnifti-doc,
 libopenmeeg-dev,
 libopenslide-java,
 libvia-dev,
 libvmtk-dev,
 libvtk-dicom-java,
 libvtkedge-dev,
 libvxl1-dev,
 libxdffileio-dev,
 octave-dicom,
 python-libavg,
 python-tifffile,
 python-vmtk
Description: Debian Med image processing and visualization packages development
 This metapackage will install Debian packages which might be useful
 for developing applications for medical image processing and
 visualization.

Package: med-laboratory
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: opencfu,
 orthanc-wsi
Suggests: catissuesuite,
 openelis,
 openfreezer
Description: Debian Med suggestions for medical laboratories
 This metapackage contains dependencies for software and that could
 be useful ro run a medical laboratory.

Package: med-oncology
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: dicompyler,
 orthanc-wsi
Suggests: planunc,
 uw-prism
Description: Debian Med packages for oncology
 This metapackage will install tools that are useful for radiation
 oncology.

Package: med-pharmacy
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: chemtool,
 r-cran-dosefinding
Suggests: raccoon
Description: Debian Med packages for pharmaceutical research
 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 pharmaceutical research.

Package: med-physics
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: biosig-tools,
 gdf-tools,
 octave,
 paw,
 paw++,
 r-base
Suggests: gate,
 libbiosig-dev,
 octave-biosig,
 openvibe,
 paw-demos,
 python-biosig,
 python-multipletau
Description: Debian Med packages for medical physicists
 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 medical physicists in radiation oncology, diagnostics imaging
 and related fields.

Package: med-practice
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: entangle,
 freediams,
 freemedforms-emr,
 ginkgocadx,
 gnumed-client,
 gnumed-server,
 libchipcard-tools,
 orthanc,
 orthanc-wsi,
 qrisk2,
 r-cran-medadherence,
 sleepyhead
Suggests: clearhealth,
 elementalclinic,
 elexis,
 freeb,
 freemed,
 freeshim,
 libctapimkt1,
 medintux,
 mirrormed,
 mirth,
 openemr,
 openpms,
 openrep,
 proteus,
 remitt,
 resmedicinae,
 sqlclinic,
 thera-pi,
 tinyheb
Description: Debian Med packages for practice management
 This metapackage contains dependencies for a collection of software
 which might be helpful for practitioners to manage their practice.

Package: med-psychology
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: praat,
 psignifit,
 psychopy,
 python-pyepl,
 r-cran-foreign,
 r-cran-psy
Suggests: miscpsycho,
 psych,
 psychometric,
 psychotree,
 psyphy,
 python-pypsignifit,
 python-visionegg,
 science-psychophysics
Description: Debian Med packages for psychology
 This metapackage contains dependencies for a collection of software
 which might be helpful for psychological research.

Package: med-rehabilitation
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: sitplus
Suggests: aghermann
Description: Debian Med packages for rehabilitation technologies
 This metapackage will install tools that are useful for
 rehabilitation and therapy.

Package: med-statistics
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: r-bioc-edger,
 r-bioc-limma,
 r-bioc-multtest,
 r-bioc-qvalue,
 r-cran-ade4,
 r-cran-beeswarm,
 r-cran-pvclust,
 r-cran-randomforest
Suggests: rstudio,
 science-statistics
Description: Debian Med statistics
 This metapackage will install packages which are helpful to do statistics
 with a special focus on tasks in medical care.

Package: med-tools
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: cronometer,
 edfbrowser,
 galileo,
 hunspell-de-med,
 hunspell-en-med,
 nutsqlite,
 pcalendar,
 pondus,
 python-clips,
 python-fitbit,
 quitcount,
 r-cran-fitbitscraper,
 r-cran-fitcoach,
 wgerman-medical,
 workrave
Suggests: cycle,
 entangle,
 goldencheetah,
 mencal,
 mssstest,
 nut-nutrition,
 pesco,
 sleepyhead
Description: Debian Med several tools
 This metapackage will install tools for several purposes in health care.
 Currently it contains some simple programs for Personal Health.

Package: med-typesetting
Section: metapackages
Architecture: all
Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: king,
 texlive-latex-extra,
 texlive-science
Suggests: biber,
 bibus,
 jabref-plugin-oo,
 kbibtex,
 r-cran-qqman,
 referencer
Description: Debian Med support for typesetting and publishing
 This metapackage will install Debian packages that might be helpful
 for typesetting and publishing in medical care and structural
 biology.

