Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Beagle
Upstream-Contact: Brian L. Browning <browning at uw.edu>
Source: https://faculty.washington.edu/browning/beagle/beagle.html
Comment: Remove embedded htsjdk (samtools)
Files-Excluded: net

Files: *
Copyright: 2013-2018 Brian L. Browning
License: GPL-3+

Files: beagleutil/IntIntervalTree.java
       beagleutil/BasicIntInterval.java
       haplotype/GenotypeCorrection.java
       sample/RecombSingleBaum.java
       sample/DiploidStates.java
       sample/RecombSingleBaumLevel.java
       sample/RestrictedDag.java
       sample/SamplerData.java
       vcf/FuzzyGL.java
Copyright: 2013-2017 Brian L. Browning
License: Apache-2.0

Files: debian/*
Copyright: 2016-2017 Dylan Aïssi <bob.dybian@gmail.com>
License: GPL-3+

Files: debian/upstream.docs/*
Copyright: 2013-2018 Brian L. Browning
License: GPL-3+

License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this package; if not, write to the Free Software
 Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
 .
 On Debian systems, the full text of the GNU General Public License
 version 3 can be found in `/usr/share/common-licenses/GPL-3'.

License: Apache-2.0
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
 You may obtain a copy of the License at
 .
      http://www.apache.org/licenses/LICENSE-2.0
 .
 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 .
 On Debian systems, the full text of the Apache Software License version 2 can
 be found in the file `/usr/share/common-licenses/Apache-2.0'.

