FDNAPARS(1e)

NAME
fdnapars - DNA parsimony algorithm

SYNOPSIS

fdnapars -sequence seqsetall -intreefile tree [-weights properties] [-maxtrees integer] -thorough toggle -rearrange boolean [-transversion boolean] -njumble integer -seed integer [-outgrno integer] [-thresh toggle] -threshold float -outfile outfile [-trout toggle] -outtreefile outfile [-printdata boolean] [-progress boolean] [-stepbox boolean] [-ancseq boolean] [-treeprint boolean] -dotdiff boolean

fdnapars -help

DESCRIPTION

fdnapars is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).

OPTIONS

  Input section

-sequence seqsetall
    File containing one or more sequence alignments

-intreefile tree

-weights properties

  Additional section

-maxtrees integer
    Default value: 10000

-thorough toggle
    Default value: Y

-rearrange boolean
    Default value: Y

-transversion boolean
    Default value: N

-njumble integer

-seed integer
    Default value: 1

-outgrno integer

-thresh toggle
    Default value: N

-threshold float
    Default value: 1.0

  Output section

-outfile outfile

-trout toggle
    Default value: Y

-outtreefile outfile

-printdata boolean
    Default value: N

-progress boolean
    Default value: Y

-stepbox boolean
    Default value: N

-ancseq boolean
    Default value: N

-treeprint boolean
    Default value: Y

-dotdiff boolean
    Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fdnapars is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
    Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.