cufflinks (2.2.1+dfsg.1-2) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata:
    - Added references to software catalogues.
    - yamllint cleanliness

  [ Alexandre Mestiashvili ]
  * Add patch fixing FTBFS with upcoming boost1.65+, Closes: #880375
    thanks to Dimitri John Ledkov <xnox@ubuntu.com>
  * Bump Standards-Version to 4.1.1

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Thu, 02 Nov 2017 09:48:09 +0100

cufflinks (2.2.1+dfsg.1-1) unstable; urgency=medium

  [ Mattia Rizzolo ]
  * add a closes to the previous changelog entry

  [ Alexandre Mestiashvili ]
  * Update d/watch
  * Update d/copyright, add Files-Excluded section,
    use https for copyrigth-format, add Upstream-Name
  * New upstream version 2.2.1+dfsg.1
  * Update d/rules, use variables provided by /usr/share/dpkg/default.mk
  * Add patch fixing ftbfs with gcc-7, Closes: #871234
    thanks to Jeff Epler <jepler@unpythonic.net>
  * Update 0003-fix_includes_path.patch and 0001-fix_spelling.patch
  * Bump Standards-Version in d/control

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 05 Sep 2017 23:42:17 +0200

cufflinks (2.2.1-3) unstable; urgency=medium

  * Use unversioned libboost.  (Thanks for the hint to Gianfranco Costamagna)
    Closes: 833760
  * Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon.
    Thanks for the hint to Graham Inggs <ginggs@debian.org>
    Closes: #833493

 -- Andreas Tille <tille@debian.org>  Tue, 16 Aug 2016 13:46:04 +0200

cufflinks (2.2.1-2) unstable; urgency=medium

  * Watch file pointing to Github
  * cme fix dpkg-control
  * Use libboost 1.60
    Closes: #797280, #822121
  * hardening=+all

 -- Andreas Tille <tille@debian.org>  Tue, 12 Jul 2016 14:12:45 +0200

cufflinks (2.2.1-1) unstable; urgency=medium

  * d/control: cme fix dpkg-control
  * Imported Upstream version 2.2.1

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 16 May 2014 16:59:52 +0200

cufflinks (2.2.0-1) unstable; urgency=medium

  [ James McCoy ]
  * Move debian/upstream to debian/upstream/metadata

  [ Alexandre Mestiashvili ]
  * Imported Upstream version 2.2.0
  * d/rules:
     - link to the serialization library "-lboost_serialization"
     - generate man pages automatically with help2man
     - separate rule for manpage for gffread as it doesn't return usage
       message when executed without arguments
  * d/control:
     - use canonical VCS-* fields
     - updated Standards-Version
     - Build-Depends: add help2man
  * d/patches/gffread_show_usage.patch: fix wrong USAGE indentation causing
    buffer overflow in gffread when using -h, --help and some other arguments
  * d/*.1: removed obsoleted manpages
  * d/copyright: updated Source, Copyright years

 -- Alexandre Mestiashvili <alex@biotec.tu-dresden.de>  Fri, 11 Apr 2014 13:12:25 +0200

cufflinks (2.1.1-4) unstable; urgency=low

  * Force use boost_system, boost_thread when linking. Fixing FTBFS in
    ubuntu.
  * Enable parallel build.

 -- Dmitrijs Ledkovs <xnox@ubuntu.com>  Wed, 23 Oct 2013 16:30:40 +0100

cufflinks (2.1.1-3) unstable; urgency=low

  * Rebuild against boost1.54.

 -- Dmitrijs Ledkovs <xnox@debian.org>  Sat, 07 Sep 2013 17:10:26 +0100

cufflinks (2.1.1-2) unstable; urgency=low

  * Fix failing to build from source against boost1.53. (Closes: #709252)

 -- Dmitrijs Ledkovs <xnox@debian.org>  Thu, 23 May 2013 01:05:02 +0100

cufflinks (2.1.1-1) unstable; urgency=low

  [Carlos Borroto]
  * New upstream release.
  * Added libeigen3-dev to build-deps.
  * Modified fix_includes_path to properly include Eigen library.
  * Bumped libboost-dev requirement to >= 1.47.0

  [ Alexandre Mestiashvili ]
  * Imported debian/patches/0004-fix-m64-usage-and-lfs.patch, Closes: #675985

  [ Andreas Tille ]
  * Upstream release 2.1.1 (+ adapted patches)
    Closes: #687968
  * debian/control:
     - Removed: DM-Upload-Allowed
     - Standards-Version: 3.9.4
     - Debhelper 9 (also d/compat)
       requires d/p/format-security.patch for hardening via --format-security
     - normalised format

 -- Andreas Tille <tille@debian.org>  Wed, 22 May 2013 13:27:40 +0200

cufflinks (1.3.0-2) unstable; urgency=low

  [ Charles Plessy ]
  * Normalised and summarised debian/copyright.

  [ Carlos Borroto ]
  * Added tophat to Enhances

  [ Andreas Tille ]
  * debian/upstream: Added references as specified in tasks file
  * debian/copyright: Added Upstream-Contact e-mail
  * debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
    Closes: #672744

 -- Charles Plessy <plessy@debian.org>  Thu, 24 May 2012 12:36:16 +0900

cufflinks (1.3.0-1) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * New upstream release
  * Fixed spelling error.
  * Updated source version

  [ Charles Plessy ]
  * Removed quilt patch management, and rely on dpkg-dev exclusively.

 -- Charles Plessy <plessy@debian.org>  Fri, 06 Jan 2012 09:20:23 +0900

cufflinks (1.2.1-1) unstable; urgency=low

  [ Alexandre Mestiashvili ]
  * New upstream release
  * added patch to fix bam.h location .
  * debian/rules invoke autoreconf
  * debian/rules added overrides for dh_auto_clean and dh_clean
  * added missing dependency - quilt .We use dh_quilt_patch,
    dh_quilt_unpatch helpers
  * debian/control added dependency python (>=2.6.6-3~) for source package
  * debian/control added dependency python (>=2.6.6-3~) for binary package

  [ Andreas Tille ]
  * Added myself to uploaders
  * Debhelper 8 (control+compat)
  * debian/watch: removed dh-make template from watch file
  * debian/rules: invoke autotools_dev

  [ Charles Plessy ]
  * Switch to non-free section because of the locfit license (debian/control).
  * Added myself to Uploaders (debian/control).
  * Compress binary package with xz (debian/rules).
  * Pre-depend on dpkg (>= 1.15.6) for xz compression (Ubuntu LTS).

 -- Charles Plessy <plessy@debian.org>  Sun, 11 Dec 2011 12:07:02 +0900

cufflinks (1.0.3-1) UNRELEASED; urgency=low

  [ Alex Mestiashvili ]
  * added docs
  * added missing dependency
  * libbam-dev provides necessary headers only from 0.1.16 version .
    Fixed in control file.

  [ Charles Plessy ]
  * Add debian/gbp.conf to show the package is managed with git-buildpackage.
  * Converted Debian copyright file to machine-readable format (DEP 5).
  * Reviewed copyright and license notices, and found that locfit is non-free…

  [ Alex Mestiashvili ]
  * Imported Upstream version 1.0.3 (bugfix)

 -- Alex Mestiashvili <alex@biotec.tu-dresden.de>  Wed, 08 Jun 2011 06:31:10 +0000

cufflinks (1.0.2-1) UNRELEASED; urgency=low

  * Initial release (Closes: #627799)

 -- Alex Mestiashvili <alex@biotec.tu-dresden.de>  Tue, 24 May 2011 13:43:09 +0200
