<?xml version="1.0" standalone="yes"?>
<!-- Generated by BEAUTi v1.4.2                                              -->
<!--       by Alexei J. Drummond and Andrew Rambaut                          -->
<!--       Department of Computer Science, University of Auckland and        -->
<!--       Institute of Evolutionary Biology, University of Edinburgh        -->
<!--       http://beast.bio.ed.ac.uk/                                        -->
<beast>
	
	<!-- The list of taxa analyse (can also include dates/ages).                 -->
	<!-- ntax=104                                                                -->
	<taxa id="taxa">
		<taxon id="dor1"/>
		<taxon id="dor2"/>
		<taxon id="dor3"/>
		<taxon id="dor4"/>
		<taxon id="dor5"/>
		<taxon id="dor6"/>
		<taxon id="dor7"/>
		<taxon id="dor8"/>
		<taxon id="dor9"/>
		<taxon id="dor10"/>
		<taxon id="dor11"/>
		<taxon id="dor12"/>
		<taxon id="dor13"/>
		<taxon id="dor14"/>
		<taxon id="dor15"/>
		<taxon id="dor16"/>
		<taxon id="dor17"/>
		<taxon id="dor18"/>
		<taxon id="dor19"/>
		<taxon id="dor20"/>
		<taxon id="dor21"/>
		<taxon id="dor22"/>
		<taxon id="dor23"/>
		<taxon id="dor24"/>
		<taxon id="dor25"/>
		<taxon id="dor26"/>
		<taxon id="dor27"/>
		<taxon id="dor28"/>
		<taxon id="dor29"/>
		<taxon id="dor30"/>
		<taxon id="dor31"/>
		<taxon id="dor32"/>
		<taxon id="dor33"/>
		<taxon id="dor34"/>
		<taxon id="dor35"/>
		<taxon id="dor36"/>
		<taxon id="dor37"/>
		<taxon id="dor38"/>
		<taxon id="dor39"/>
		<taxon id="dor40"/>
		<taxon id="dor41"/>
		<taxon id="dor42"/>
		<taxon id="dor43"/>
		<taxon id="dor44"/>
		<taxon id="dor45"/>
		<taxon id="dor46"/>
		<taxon id="dor47"/>
		<taxon id="dor48"/>
		<taxon id="dor49"/>
		<taxon id="dor50"/>
		<taxon id="dor51"/>
		<taxon id="dor52"/>
		<taxon id="dor53"/>
		<taxon id="dor54"/>
		<taxon id="dor55"/>
		<taxon id="dor56"/>
		<taxon id="dor57"/>
		<taxon id="dor58"/>
		<taxon id="dor59"/>
		<taxon id="dor60"/>
		<taxon id="dor61"/>
		<taxon id="dor62"/>
		<taxon id="dor63"/>
		<taxon id="dor64"/>
		<taxon id="dor65"/>
		<taxon id="dor66"/>
		<taxon id="dor67"/>
		<taxon id="dor68"/>
		<taxon id="dor69"/>
		<taxon id="dor70"/>
		<taxon id="dor71"/>
		<taxon id="dor72"/>
		<taxon id="dor73"/>
		<taxon id="dor74"/>
		<taxon id="dor75"/>
		<taxon id="dor76"/>
		<taxon id="dor77"/>
		<taxon id="dor78"/>
		<taxon id="dor79"/>
		<taxon id="dor80"/>
		<taxon id="dor81"/>
		<taxon id="dor82"/>
		<taxon id="dor83"/>
		<taxon id="dor84"/>
		<taxon id="dor85"/>
		<taxon id="dor86"/>
		<taxon id="alm1"/>
		<taxon id="alm2"/>
		<taxon id="dum"/>
		<taxon id="sti2"/>
		<taxon id="sti6"/>
		<taxon id="sti21"/>
		<taxon id="sti31"/>
		<taxon id="sti34"/>
		<taxon id="sti38"/>
		<taxon id="syn1"/>
		<taxon id="syn2"/>
		<taxon id="syn3"/>
		<taxon id="syn4"/>
		<taxon id="syn5"/>
		<taxon id="syn6"/>
		<taxon id="Tauratus"/>
		<taxon id="Tflavipes"/>
		<taxon id="Tgeranii"/>
	</taxa>
	
	<taxa id="Europe Mdor">
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor26"/>
		<taxon idref="dor3"/>
		<taxon idref="dor32"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor42"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor66"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor81"/>
	</taxa>
	<taxa id="Europe and Iberia">
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor26"/>
		<taxon idref="dor27"/>
		<taxon idref="dor3"/>
		<taxon idref="dor32"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor42"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor6"/>
		<taxon idref="dor66"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor81"/>
	</taxa>
	<taxa id="Mdor sensu lato">
		<taxon idref="alm2"/>
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor11"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor15"/>
		<taxon idref="dor16"/>
		<taxon idref="dor17"/>
		<taxon idref="dor18"/>
		<taxon idref="dor19"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor24"/>
		<taxon idref="dor25"/>
		<taxon idref="dor26"/>
		<taxon idref="dor27"/>
		<taxon idref="dor28"/>
		<taxon idref="dor29"/>
		<taxon idref="dor3"/>
		<taxon idref="dor30"/>
		<taxon idref="dor31"/>
		<taxon idref="dor32"/>
		<taxon idref="dor33"/>
		<taxon idref="dor34"/>
		<taxon idref="dor35"/>
		<taxon idref="dor36"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor40"/>
		<taxon idref="dor41"/>
		<taxon idref="dor42"/>
		<taxon idref="dor43"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor51"/>
		<taxon idref="dor52"/>
		<taxon idref="dor53"/>
		<taxon idref="dor54"/>
		<taxon idref="dor55"/>
		<taxon idref="dor56"/>
		<taxon idref="dor57"/>
		<taxon idref="dor58"/>
		<taxon idref="dor59"/>
		<taxon idref="dor6"/>
		<taxon idref="dor60"/>
		<taxon idref="dor61"/>
		<taxon idref="dor62"/>
		<taxon idref="dor63"/>
		<taxon idref="dor64"/>
		<taxon idref="dor65"/>
		<taxon idref="dor66"/>
		<taxon idref="dor67"/>
		<taxon idref="dor68"/>
		<taxon idref="dor69"/>
		<taxon idref="dor7"/>
		<taxon idref="dor70"/>
		<taxon idref="dor71"/>
		<taxon idref="dor72"/>
		<taxon idref="dor73"/>
		<taxon idref="dor74"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor80"/>
		<taxon idref="dor81"/>
		<taxon idref="dor82"/>
		<taxon idref="dor83"/>
		<taxon idref="dor84"/>
		<taxon idref="dor85"/>
		<taxon idref="dor86"/>
		<taxon idref="dor9"/>
		<taxon idref="dum"/>
	</taxa>
	<taxa id="eastern Mdor clade">
		<taxon idref="alm2"/>
		<taxon idref="dor11"/>
		<taxon idref="dor15"/>
		<taxon idref="dor16"/>
		<taxon idref="dor17"/>
		<taxon idref="dor19"/>
		<taxon idref="dor24"/>
		<taxon idref="dor28"/>
		<taxon idref="dor29"/>
		<taxon idref="dor36"/>
		<taxon idref="dor40"/>
		<taxon idref="dor41"/>
		<taxon idref="dor54"/>
		<taxon idref="dor55"/>
		<taxon idref="dor56"/>
		<taxon idref="dor57"/>
		<taxon idref="dor58"/>
		<taxon idref="dor59"/>
		<taxon idref="dor60"/>
		<taxon idref="dor61"/>
		<taxon idref="dor62"/>
		<taxon idref="dor64"/>
		<taxon idref="dor67"/>
		<taxon idref="dor68"/>
		<taxon idref="dor69"/>
		<taxon idref="dor70"/>
		<taxon idref="dor71"/>
		<taxon idref="dor72"/>
		<taxon idref="dor73"/>
		<taxon idref="dor74"/>
		<taxon idref="dor80"/>
		<taxon idref="dor9"/>
	</taxa>
	<taxa id="main Mdor and dum">
		<taxon idref="alm2"/>
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor11"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor15"/>
		<taxon idref="dor16"/>
		<taxon idref="dor17"/>
		<taxon idref="dor19"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor24"/>
		<taxon idref="dor26"/>
		<taxon idref="dor27"/>
		<taxon idref="dor28"/>
		<taxon idref="dor29"/>
		<taxon idref="dor3"/>
		<taxon idref="dor32"/>
		<taxon idref="dor36"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor40"/>
		<taxon idref="dor41"/>
		<taxon idref="dor42"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor51"/>
		<taxon idref="dor54"/>
		<taxon idref="dor55"/>
		<taxon idref="dor56"/>
		<taxon idref="dor57"/>
		<taxon idref="dor58"/>
		<taxon idref="dor59"/>
		<taxon idref="dor6"/>
		<taxon idref="dor60"/>
		<taxon idref="dor61"/>
		<taxon idref="dor62"/>
		<taxon idref="dor64"/>
		<taxon idref="dor66"/>
		<taxon idref="dor67"/>
		<taxon idref="dor68"/>
		<taxon idref="dor69"/>
		<taxon idref="dor7"/>
		<taxon idref="dor70"/>
		<taxon idref="dor71"/>
		<taxon idref="dor72"/>
		<taxon idref="dor73"/>
		<taxon idref="dor74"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor80"/>
		<taxon idref="dor81"/>
		<taxon idref="dor9"/>
		<taxon idref="dum"/>
	</taxa>
	<taxa id="main Mdor clade">
		<taxon idref="alm2"/>
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor11"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor15"/>
		<taxon idref="dor16"/>
		<taxon idref="dor17"/>
		<taxon idref="dor19"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor24"/>
		<taxon idref="dor26"/>
		<taxon idref="dor27"/>
		<taxon idref="dor28"/>
		<taxon idref="dor29"/>
		<taxon idref="dor3"/>
		<taxon idref="dor32"/>
		<taxon idref="dor36"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor40"/>
		<taxon idref="dor41"/>
		<taxon idref="dor42"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor51"/>
		<taxon idref="dor54"/>
		<taxon idref="dor55"/>
		<taxon idref="dor56"/>
		<taxon idref="dor57"/>
		<taxon idref="dor58"/>
		<taxon idref="dor59"/>
		<taxon idref="dor6"/>
		<taxon idref="dor60"/>
		<taxon idref="dor61"/>
		<taxon idref="dor62"/>
		<taxon idref="dor64"/>
		<taxon idref="dor66"/>
		<taxon idref="dor67"/>
		<taxon idref="dor68"/>
		<taxon idref="dor69"/>
		<taxon idref="dor7"/>
		<taxon idref="dor70"/>
		<taxon idref="dor71"/>
		<taxon idref="dor72"/>
		<taxon idref="dor73"/>
		<taxon idref="dor74"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor80"/>
		<taxon idref="dor81"/>
		<taxon idref="dor9"/>
	</taxa>
	<taxa id="main Mdor not basal east">
		<taxon idref="alm2"/>
		<taxon idref="dor1"/>
		<taxon idref="dor10"/>
		<taxon idref="dor11"/>
		<taxon idref="dor12"/>
		<taxon idref="dor13"/>
		<taxon idref="dor14"/>
		<taxon idref="dor15"/>
		<taxon idref="dor16"/>
		<taxon idref="dor17"/>
		<taxon idref="dor19"/>
		<taxon idref="dor2"/>
		<taxon idref="dor20"/>
		<taxon idref="dor21"/>
		<taxon idref="dor22"/>
		<taxon idref="dor23"/>
		<taxon idref="dor24"/>
		<taxon idref="dor26"/>
		<taxon idref="dor27"/>
		<taxon idref="dor28"/>
		<taxon idref="dor29"/>
		<taxon idref="dor3"/>
		<taxon idref="dor32"/>
		<taxon idref="dor36"/>
		<taxon idref="dor37"/>
		<taxon idref="dor38"/>
		<taxon idref="dor39"/>
		<taxon idref="dor4"/>
		<taxon idref="dor40"/>
		<taxon idref="dor41"/>
		<taxon idref="dor42"/>
		<taxon idref="dor44"/>
		<taxon idref="dor45"/>
		<taxon idref="dor46"/>
		<taxon idref="dor47"/>
		<taxon idref="dor48"/>
		<taxon idref="dor49"/>
		<taxon idref="dor5"/>
		<taxon idref="dor50"/>
		<taxon idref="dor54"/>
		<taxon idref="dor55"/>
		<taxon idref="dor56"/>
		<taxon idref="dor57"/>
		<taxon idref="dor58"/>
		<taxon idref="dor59"/>
		<taxon idref="dor6"/>
		<taxon idref="dor60"/>
		<taxon idref="dor61"/>
		<taxon idref="dor62"/>
		<taxon idref="dor64"/>
		<taxon idref="dor66"/>
		<taxon idref="dor67"/>
		<taxon idref="dor68"/>
		<taxon idref="dor69"/>
		<taxon idref="dor70"/>
		<taxon idref="dor71"/>
		<taxon idref="dor72"/>
		<taxon idref="dor73"/>
		<taxon idref="dor74"/>
		<taxon idref="dor75"/>
		<taxon idref="dor76"/>
		<taxon idref="dor77"/>
		<taxon idref="dor78"/>
		<taxon idref="dor79"/>
		<taxon idref="dor8"/>
		<taxon idref="dor80"/>
		<taxon idref="dor81"/>
		<taxon idref="dor9"/>
	</taxa>
	<taxa id="weird Mdor">
		<taxon idref="dor18"/>
		<taxon idref="dor25"/>
		<taxon idref="dor30"/>
		<taxon idref="dor31"/>
		<taxon idref="dor33"/>
		<taxon idref="dor34"/>
		<taxon idref="dor35"/>
		<taxon idref="dor43"/>
		<taxon idref="dor52"/>
		<taxon idref="dor53"/>
		<taxon idref="dor63"/>
		<taxon idref="dor65"/>
		<taxon idref="dor82"/>
		<taxon idref="dor83"/>
		<taxon idref="dor84"/>
		<taxon idref="dor85"/>
		<taxon idref="dor86"/>
	</taxa>
	
	<!-- The sequence alignment (each sequence refers to a taxon above).         -->
	<!-- ntax=104 nchar=433                                                      -->
	<alignment id="alignment" dataType="nucleotide">
		<sequence>
			<taxon idref="dor1"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor2"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor3"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor4"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor5"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor6"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor7"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor8"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor9"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor10"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor11"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor12"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor13"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor14"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor15"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor16"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor17"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor18"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor19"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor20"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor21"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor22"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor23"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor24"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor25"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor26"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor27"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor28"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor29"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor30"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor31"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor32"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor33"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor34"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor35"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor36"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor37"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor38"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor39"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor40"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor41"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor42"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor43"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor44"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor45"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor46"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor47"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor48"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor49"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor50"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor51"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor52"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor53"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor54"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor55"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor56"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor57"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor58"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor59"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor60"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor61"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor62"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor63"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor64"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor65"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor66"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor67"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor68"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor69"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor70"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor71"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor72"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor73"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor74"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor75"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor76"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor77"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor78"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor79"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor80"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor81"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor82"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor83"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor84"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor85"/>
A
		</sequence>
		<sequence>
			<taxon idref="dor86"/>
A
		</sequence>
		<sequence>
			<taxon idref="alm1"/>
A
		</sequence>
		<sequence>
			<taxon idref="alm2"/>
A
		</sequence>
		<sequence>
			<taxon idref="dum"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti2"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti6"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti21"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti31"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti34"/>
A
		</sequence>
		<sequence>
			<taxon idref="sti38"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn1"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn2"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn3"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn4"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn5"/>
A
		</sequence>
		<sequence>
			<taxon idref="syn6"/>
A
		</sequence>
		<sequence>
			<taxon idref="Tauratus"/>
A
		</sequence>
		<sequence>
			<taxon idref="Tflavipes"/>
A
		</sequence>
		<sequence>
			<taxon idref="Tgeranii"/>
T
		</sequence>
	</alignment>
	
	<!-- The unique patterns for codon position 1                                -->
	<!-- npatterns=111                                                           -->
	<patterns id="patterns1" from="1" every="3">
		<alignment idref="alignment"/>
	</patterns>
	<!-- The unique patterns for codon position 2                                -->
	<!-- npatterns=48                                                            -->
	<patterns id="patterns2" from="2" every="3">
		<alignment idref="alignment"/>
	</patterns>
	<!-- The unique patterns for codon position 3                                -->
	<!-- npatterns=24                                                            -->
	<patterns id="patterns3" from="3" every="3">
		<alignment idref="alignment"/>
	</patterns>
	
	<!-- A prior assumption that the population size has remained constant       -->
	<!-- throughout the time spanned by the genealogy.                           -->
	<constantSize id="constant" units="substitutions">
		<populationSize>
			<parameter id="constant.popSize" value="7.2" lower="0.0" upper="7200.0"/>
		</populationSize>
	</constantSize>
	
	<!-- Generate a random starting tree under the coalescent process            -->
	<coalescentTree id="startingTree">
		<constrainedTaxa>
			<taxa idref="taxa"/>
			<tmrca>
				<taxa idref="Europe Mdor"/>
			</tmrca>
			<tmrca>
				<taxa idref="Europe and Iberia"/>
			</tmrca>
			<tmrca>
				<taxa idref="Mdor sensu lato"/>
			</tmrca>
			<tmrca>
				<taxa idref="eastern Mdor clade"/>
			</tmrca>
			<tmrca>
				<taxa idref="main Mdor and dum"/>
			</tmrca>
			<tmrca>
				<taxa idref="main Mdor clade"/>
			</tmrca>
			<tmrca>
				<taxa idref="main Mdor not basal east"/>
			</tmrca>
			<tmrca>
				<taxa idref="weird Mdor"/>
			</tmrca>
		</constrainedTaxa>
		<constantSize idref="constant"/>
	</coalescentTree>
	
	<treeModel id="treeModel">
		<coalescentTree idref="startingTree"/>
		<rootHeight>
			<parameter id="treeModel.rootHeight"/>
		</rootHeight>
		<nodeHeights internalNodes="true">
			<parameter id="treeModel.internalNodeHeights"/>
		</nodeHeights>
		<nodeHeights internalNodes="true" rootNode="true">
			<parameter id="treeModel.allInternalNodeHeights"/>
		</nodeHeights>
	</treeModel>
	
	<coalescentLikelihood id="coalescent">
		<model>
			<constantSize idref="constant"/>
		</model>
		<populationTree>
			<treeModel idref="treeModel"/>
		</populationTree>
	</coalescentLikelihood>
	
	<!-- The uncorrelated relaxed clock (Drummond, Ho, Phillips & Rambaut, 2006) -->
	<discretizedBranchRates id="branchRates">
		<treeModel idref="treeModel"/>
		<distribution>
			<logNormalDistributionModel meanInRealSpace="true">
				<mean>
					<parameter id="ucld.mean" value="0.0115"/>
				</mean>
				<stdev>
					<parameter id="ucld.stdev" value="0.1" lower="0.0" upper="10.0"/>
				</stdev>
			</logNormalDistributionModel>
		</distribution>
		<rateCategories>
			<parameter id="branchRates.categories" dimension="206"/>
		</rateCategories>
	</discretizedBranchRates>
	
	<rateStatistic id="meanRate" name="meanRate" mode="mean" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	
	<rateStatistic id="coefficientOfVariation" name="coefficientOfVariation" mode="coefficientOfVariation" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	
	<rateCovarianceStatistic id="covariance" name="covariance">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateCovarianceStatistic>
	
	<!-- The general time reversible (GTR) substitution model                    -->
	<gtrModel id="gtr1">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<alignment idref="alignment"/>
				<frequencies>
					<parameter id="gtr1.frequencies" dimension="4"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<rateAC>
			<parameter id="gtr1.ac" value="1.0" lower="0.0" upper="100.0"/>
		</rateAC>
		<rateAG>
			<parameter id="gtr1.ag" value="1.0" lower="0.0" upper="100.0"/>
		</rateAG>
		<rateAT>
			<parameter id="gtr1.at" value="1.0" lower="0.0" upper="100.0"/>
		</rateAT>
		<rateCG>
			<parameter id="gtr1.cg" value="1.0" lower="0.0" upper="100.0"/>
		</rateCG>
		<rateGT>
			<parameter id="gtr1.gt" value="1.0" lower="0.0" upper="100.0"/>
		</rateGT>
	</gtrModel>
	<!-- The general time reversible (GTR) substitution model                    -->
	<gtrModel id="gtr2">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<alignment idref="alignment"/>
				<frequencies>
					<parameter id="gtr2.frequencies" dimension="4"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<rateAC>
			<parameter id="gtr2.ac" value="1.0" lower="0.0" upper="100.0"/>
		</rateAC>
		<rateAG>
			<parameter id="gtr2.ag" value="1.0" lower="0.0" upper="100.0"/>
		</rateAG>
		<rateAT>
			<parameter id="gtr2.at" value="1.0" lower="0.0" upper="100.0"/>
		</rateAT>
		<rateCG>
			<parameter id="gtr2.cg" value="1.0" lower="0.0" upper="100.0"/>
		</rateCG>
		<rateGT>
			<parameter id="gtr2.gt" value="1.0" lower="0.0" upper="100.0"/>
		</rateGT>
	</gtrModel>
	<!-- The general time reversible (GTR) substitution model                    -->
	<gtrModel id="gtr3">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<alignment idref="alignment"/>
				<frequencies>
					<parameter id="gtr3.frequencies" dimension="4"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<rateAC>
			<parameter id="gtr3.ac" value="1.0" lower="0.0" upper="100.0"/>
		</rateAC>
		<rateAG>
			<parameter id="gtr3.ag" value="1.0" lower="0.0" upper="100.0"/>
		</rateAG>
		<rateAT>
			<parameter id="gtr3.at" value="1.0" lower="0.0" upper="100.0"/>
		</rateAT>
		<rateCG>
			<parameter id="gtr3.cg" value="1.0" lower="0.0" upper="100.0"/>
		</rateCG>
		<rateGT>
			<parameter id="gtr3.gt" value="1.0" lower="0.0" upper="100.0"/>
		</rateGT>
	</gtrModel>
	
	<!-- site model                                                              -->
	<siteModel id="siteModel1">
		<substitutionModel>
			<gtrModel idref="gtr1"/>
		</substitutionModel>
		<relativeRate>
			<parameter id="siteModel1.mu" value="1.0" lower="0.0" upper="100.0"/>
		</relativeRate>
		<gammaShape gammaCategories="4">
			<parameter id="siteModel1.alpha" value="0.5" lower="0.0" upper="100.0"/>
		</gammaShape>
		<proportionInvariant>
			<parameter id="siteModel1.pInv" value="0.5" lower="0.0" upper="1.0"/>
		</proportionInvariant>
	</siteModel>
	<!-- site model                                                              -->
	<siteModel id="siteModel2">
		<substitutionModel>
			<gtrModel idref="gtr2"/>
		</substitutionModel>
		<relativeRate>
			<parameter id="siteModel2.mu" value="1.0" lower="0.0" upper="100.0"/>
		</relativeRate>
		<gammaShape gammaCategories="4">
			<parameter id="siteModel2.alpha" value="0.5" lower="0.0" upper="100.0"/>
		</gammaShape>
		<proportionInvariant>
			<parameter id="siteModel2.pInv" value="0.5" lower="0.0" upper="1.0"/>
		</proportionInvariant>
	</siteModel>
	<!-- site model                                                              -->
	<siteModel id="siteModel3">
		<substitutionModel>
			<gtrModel idref="gtr3"/>
		</substitutionModel>
		<relativeRate>
			<parameter id="siteModel3.mu" value="1.0" lower="0.0" upper="100.0"/>
		</relativeRate>
		<gammaShape gammaCategories="4">
			<parameter id="siteModel3.alpha" value="0.5" lower="0.0" upper="100.0"/>
		</gammaShape>
		<proportionInvariant>
			<parameter id="siteModel3.pInv" value="0.5" lower="0.0" upper="1.0"/>
		</proportionInvariant>
	</siteModel>

	<compoundParameter id="allMus">
		<parameter idref="siteModel1.mu"/>
		<parameter idref="siteModel2.mu"/>
		<parameter idref="siteModel3.mu"/>
	</compoundParameter>
	
	<treeLikelihood id="treeLikelihood1">
		<patterns idref="patterns1"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="siteModel1"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>
	<treeLikelihood id="treeLikelihood2">
		<patterns idref="patterns2"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="siteModel2"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>
	<treeLikelihood id="treeLikelihood3">
		<patterns idref="patterns3"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="siteModel3"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>
	
	
	<tmrcaStatistic id="tmrca(Europe Mdor)">
		<mrca>
			<taxa idref="Europe Mdor"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(Europe and Iberia)">
		<mrca>
			<taxa idref="Europe and Iberia"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(Mdor sensu lato)">
		<mrca>
			<taxa idref="Mdor sensu lato"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(eastern Mdor clade)">
		<mrca>
			<taxa idref="eastern Mdor clade"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(main Mdor and dum)">
		<mrca>
			<taxa idref="main Mdor and dum"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(main Mdor clade)">
		<mrca>
			<taxa idref="main Mdor clade"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(main Mdor not basal east)">
		<mrca>
			<taxa idref="main Mdor not basal east"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(weird Mdor)">
		<mrca>
			<taxa idref="weird Mdor"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<operators id="operators">
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr1.ac"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr1.ag"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr1.at"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr1.cg"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr1.gt"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr2.ac"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr2.ag"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr2.at"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr2.cg"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr2.gt"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr3.ac"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr3.ag"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr3.at"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr3.cg"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="gtr3.gt"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel1.alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel2.alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel3.alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel1.pInv"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel2.pInv"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="1">
			<parameter idref="siteModel3.pInv"/>
		</scaleOperator>
		<centeredScale scaleFactor="0.75" weight="1">
			<parameter idref="allMus"/>
		</centeredScale>
		<deltaExchange delta="0.75" weight="1">
			<parameter idref="allMus"/>
		</deltaExchange>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="ucld.stdev"/>
		</scaleOperator>
		<swapOperator size="1" weight="30" autoOptimize="false">
			<parameter idref="branchRates.categories"/>
		</swapOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="constant.popSize"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="treeModel.rootHeight"/>
		</scaleOperator>
		<uniformOperator weight="50">
			<parameter idref="treeModel.internalNodeHeights"/>
		</uniformOperator>
		<subtreeSlide size="0.72" gaussian="true" weight="50">
			<treeModel idref="treeModel"/>
		</subtreeSlide>
		<narrowExchange weight="50">
			<treeModel idref="treeModel"/>
		</narrowExchange>
		<wideExchange weight="3">
			<treeModel idref="treeModel"/>
		</wideExchange>
		<wilsonBalding weight="3">
			<treeModel idref="treeModel"/>
		</wilsonBalding>
	</operators>
	
	<mcmc id="mcmc" chainLength="8000000" autoOptimize="true">
		<posterior id="posterior">
			<prior id="prior">
				<coalescentLikelihood idref="coalescent"/>
			</prior>
			<likelihood id="likelihood">
				<treeLikelihood idref="treeLikelihood1"/>
				<treeLikelihood idref="treeLikelihood2"/>
				<treeLikelihood idref="treeLikelihood3"/>
			</likelihood>
		</posterior>
		<operators idref="operators"/>
		<log id="screenLog" logEvery="1000">
			<column label="Posterior" dp="4" width="12">
				<posterior idref="posterior"/>
			</column>
			<column label="Prior" dp="4" width="12">
				<prior idref="prior"/>
			</column>
			<column label="Likelihood" dp="4" width="12">
				<likelihood idref="likelihood"/>
			</column>
			<column label="Root Height" sf="6" width="12">
				<parameter idref="treeModel.rootHeight"/>
			</column>
			<column label="Rate" sf="6" width="12">
				<rateStatistic idref="meanRate"/>
			</column>
		</log>
		<log id="fileLog" logEvery="1000" fileName="Mdor phygeo ages.log">
			<posterior idref="posterior"/>
			<prior idref="prior"/>
			<likelihood idref="likelihood"/>
			<rateStatistic idref="meanRate"/>
			<parameter idref="treeModel.rootHeight"/>
			<tmrcaStatistic idref="tmrca(Europe Mdor)"/>
			<tmrcaStatistic idref="tmrca(Europe and Iberia)"/>
			<tmrcaStatistic idref="tmrca(Mdor sensu lato)"/>
			<tmrcaStatistic idref="tmrca(eastern Mdor clade)"/>
			<tmrcaStatistic idref="tmrca(main Mdor and dum)"/>
			<tmrcaStatistic idref="tmrca(main Mdor clade)"/>
			<tmrcaStatistic idref="tmrca(main Mdor not basal east)"/>
			<tmrcaStatistic idref="tmrca(weird Mdor)"/>
			<parameter idref="constant.popSize"/>
			<parameter idref="siteModel1.mu"/>
			<parameter idref="siteModel2.mu"/>
			<parameter idref="siteModel3.mu"/>
			<parameter idref="gtr1.ac"/>
			<parameter idref="gtr1.ag"/>
			<parameter idref="gtr1.at"/>
			<parameter idref="gtr1.cg"/>
			<parameter idref="gtr1.gt"/>
			<parameter idref="gtr2.ac"/>
			<parameter idref="gtr2.ag"/>
			<parameter idref="gtr2.at"/>
			<parameter idref="gtr2.cg"/>
			<parameter idref="gtr2.gt"/>
			<parameter idref="gtr3.ac"/>
			<parameter idref="gtr3.ag"/>
			<parameter idref="gtr3.at"/>
			<parameter idref="gtr3.cg"/>
			<parameter idref="gtr3.gt"/>
			<parameter idref="siteModel1.alpha"/>
			<parameter idref="siteModel2.alpha"/>
			<parameter idref="siteModel3.alpha"/>
			<parameter idref="siteModel1.pInv"/>
			<parameter idref="siteModel2.pInv"/>
			<parameter idref="siteModel3.pInv"/>
			<parameter idref="ucld.mean"/>
			<parameter idref="ucld.stdev"/>
			<rateStatistic idref="coefficientOfVariation"/>
			<rateCovarianceStatistic idref="covariance"/>
			<treeLikelihood idref="treeLikelihood1"/>
			<treeLikelihood idref="treeLikelihood2"/>
			<treeLikelihood idref="treeLikelihood3"/>
			<coalescentLikelihood idref="coalescent"/>
		</log>
		<logTree id="treeFileLog" logEvery="1000" nexusFormat="true" fileName="Mdor phygeo ages.trees">
			<treeModel idref="treeModel"/>
			<discretizedBranchRates idref="branchRates"/>
			<posterior idref="posterior"/>
		</logTree>
		<logTree id="substTreeFileLog" logEvery="1000" nexusFormat="true" fileName="Mdor phygeo ages(subst).trees" branchLengths="substitutions">
			<treeModel idref="treeModel"/>
			<discretizedBranchRates idref="branchRates"/>
		</logTree>
	</mcmc>
	
	<report>
		<property name="timer">
			<object idref="mcmc"/>
		</property>
	</report>
	
</beast>
