<!--  Patterns

1. Har
2. Gri
3. Can
4. Pom
5. Bra
6. Lai
7. Cop

-->

<beast>

    <taxa id="taxa">
        <taxon id="AN"/>
        <taxon id="BN"/>
        <taxon id="CN"/>
        <taxon id="CC"/>
        <taxon id="DN"/>
        <taxon id="DC"/>
        <taxon id="EN"/>
        <taxon id="EC"/>
        <taxon id="FN"/>
        <taxon id="FC"/>
    </taxa>

    <!-- Taxa AN and BN are outgroups,  they tend to give way
	 too many reassortment events, so I removed them.  -->

    <taxa id="taxa.sub">
        <taxon idref="AN"/>
        <!-- <taxon idref="BN"/> -->
        <taxon idref="CN"/>
        <taxon idref="CC"/>
        <taxon idref="DN"/>
        <taxon idref="DC"/>
        <taxon idref="EN"/>
        <taxon idref="EC"/>
        <taxon idref="FN"/>
        <taxon idref="FC"/>
    </taxa>


   <alignment id="Har" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATTTTTNNNACTACATCGTCTTTCGGTGTTTTTCACAATGGANNNNNNAATTTTGGAGGAATATCTGGAGCGGATGCCTTTTGTCAGNNNNNNAGCCATATTCCTTCGAACATTCCTAGTAGAGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACAGCAGGACAAAAGGACTGGGTGTTTCAACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCAAACGTAATGTTTACAAATAGTTCTGGTATGATCGATTTTCAAAGTGGTNNNAAAAAATTAGAAAATCCATTTACCCAAGTTAAAGAATCCGGGCAATGGACTGCTTTGAATACGAATTGGACGACTNNNTGGACATCTAACGGGTTCCCANNNNNNNNNNNNTCTACTTGTAACTCTTGGAACAGTGGCGCTTTAAATNNNGATTTTGGAATATTTGGAAGTTCAACTAGAACGGATTCAGATATTCTTGCAGCTTTGATTTCTACTAACGAACAGGTTGGAACTTCTTGTTCTCTATCTATTGGATATTATGGCCCATATNNNAATTTAGGTTTGGTTTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCCGGAGCGGATGCATACTGCCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCAACGACGATAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTTCTACCGAATCATAAATATNNNATAAGAGACTATGATGATGCGCTCATTATGACTACGAATAGTTCCGGAATGTTTGATTTTACAAATAATNNNAGAGAATTAGAAAATTCATTTTCGCAAATTGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACCATTNNNTGGACATCAGCAGGGGTTCCTGGACGAGAACCGATTATTTGTAACTCTTGGACTACTTCTGATAATTCTNNNGTTTATGGAGTATACGGCATGGCAAATCGTAAAGACTCAAATGTTCTTAAAGCAGCAGAATCTAATGGANNNCAATTCACAGCGGCTTGTTCCCTTAAATTTACTTCCTATGGTAATTACNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TACATATTTNNNGTTACTTCCAGCAATGGAGAATATCATAACGCANNNNNNAACTTTGGAGGAATTGCAGGAGCGGATGCTTATTGTCAGNNNNNNAGTCGTATTCCTTCGAATATTCCAAATAATAGAATTTACAAGGCGATGTTAGTGGATGGGNNNGTCAATCGGGTANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTATTCCGACCAAATCAGCAGTATNNNCAAAGAGCGGAAGACGGTGCGATCGTAATGACTACCAATAGTTCCGGTATGATCGATTTTGAAAGTGGTNNNGCAAGATTACAAAATCCTTTTACTAGTAACTTTCTCGCAGCCCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNAAAACCTGTGATTCTTGGACAACGAGCGAGTGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGACTATCATGCAGCCCCTTTGGGCGATGGAACTTGGTCTNNNAATTTAGGTCTGGTCTGTGTGGAAGAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATATTGTCAGGCAAATATTCCAAGATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAATGTGTNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGAATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATCTATNNNGTGACTTCGGTTTCCGGTGTGGGTCACAATGGANNNNNNAACTTTGGAGGAATTGCAGGAGCGGATGCTTATTGTCAGNNNNNNAGCAATATTCCAGGAAATCTTTCTCCAACAGGAGTGTATAAGGCGATGTTAGTGGATGGGNNNGTCAATCGGGTANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTGTTTCAACCAAATCAGCAATATNNNCGTAGGGCTGATGACGGTGGGATTGTAATGACTACCAATGCTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTACAAAATCCTTTCACTCGTGACTACCATGCAGCTCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNCAAGCCTGTGATTCTTGGACAACGAGCGAGTGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGACTATTATGCAGCCCCTTTGAGCGATGGAACTTGGTCTNNNAGATTAGGTCTGGTCTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTCTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAGCTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATAATTGGAATNNNTCTGCGGACGGACTTNNNNNNNNNATTACGGGACAGGCTGGAAATACAACCGAACTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGGGCCGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAATTCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTAGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCTACTCGTTTAGTGGATTGGGTACTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGTAGGTGCGGAAAAGTTTTATTGGATTGGTGTAGGAAATCAACCAGCAACTTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGACATCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGANNNNNNNNNNNNNNNNNNGCTTTTGGAAGCCATAATACCGGTTGTAACATTNNNCGGCTGAATCTACTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATACAATCTGCAATAACGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTCAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGGTCGATNNNGGGGCCACCCTGTTTACTACCGATATAAATGGTTTATTTTCCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGAAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTATTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGATCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGCNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTGTCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAGTTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATCACCNNNGATTTTGGAGGCATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGAAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACAAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTAATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACAAATGAAAATTTAACAAACTCATTTACTNNNTCCACCTTTGTTAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGCTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAGGACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Gri" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATTTTTNNNACTACATCGTCTTTCGGTGTTTTTCACAATGGANNNNNNAATTTTGGAGGAATATCTGGAGCGGATGCCTTTTGTCAGNNNNNNAGCCATATTCCTTCGAACATTCCTAGTAGAGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACGGTAGGACAAAAGGACTGGGTGTTTCAACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCAAACGTAATGTTTACAAATAGTTCTGGTATGATCGATTTTCAAAGTGGTNNNAAAAAATTGGAAAATCCATTTACCCAAGTTAAAGAATCCGGTCAATGGACTGCTTTGAATACGAATTGGACGACTNNNTGGACATCTAACGGGTTCCCANNNNNNNNNNNNTCTACTTGTAACTCTTGGAACAGTGGCGCTTTAAATNNNGATTTTGGAATATTTGGAAGTTCAACTAGAACGGATTCAGATATTCTTGCAGCTTTGATTTCTACTAACGAACAGGTTGGAACTTCTTGTTCTCTATCTATTGGATATTATGGCCCATATNNNAATTTAGGTTTGGTTTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCCGGAGCGGATGCATACTGCCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCAACGACGATAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTTCTACCGAATCATAAATATNNNATAAGAGACTATGATGATGCGCTCATTATGACTACGAATAGTTCCGGAATGTTTGATTTTACAAATAATNNNAGAGAATTAGAAAATTCATTTTCGCAAATTGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACCATTNNNTGGACATCGGCAGGGGTTCCTGGACGAGAACCGATTATTTGTAACTCTTGGACTACTTCTGATAATTCTNNNGTTTATGGAGTATACGGCATGGCAAATCGTAAAGACTCAAATGTTCTTAAAGCAGCAGAATCTAATGGANNNCAATTCACAGCGGCTTGTTCCCTTAAATTTACTTCCTATGGTAATTACNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TATATATTTNNNGTTACTTCCAGCAATGGAGAATATCATAACGCANNNNNNAACTTTGGAGGAATTGCAGGAGCGGATGCTTATTGTCAGNNNNNNAGTCGTATTCCTTCGAATATTCCAAATAATAGAATTTACAAGGCGATGTTAGTGGATGGGNNNATCAATCGGGTANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTATTCCGACCAAATCAGCAGTATNNNCAAAGAGCGGAAGACGGTGCGATCGTAATGACTACCAATAGTTCCGGTATGATCGATTTTGAAAGTGGTNNNGCAAGATTACAAAATCCTTTTACTAGTAACTCTCTCGCAGCTCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNCAAGCCTGTGATTCTTGGACAACGAGCGAATGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGGCTATCATGCAGCCCCTTTGGGCGATGGAACTTGGTCTNNNAATTTAGGTCTGGTCTGTGTGGAAGAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATATTGTCAGGCAAATATTCCAAGATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGGCTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAATGTGTNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGGATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATCTTTNNNGCAACATCGTCATTTGGCGCTGTTCACAATGGANNNNNNAATTTTGGAGGAATTACAGGAGCGGATGCTTATTGTCAGNNNNNNAGCAATATTCCAGGAAATCTTTCTCCAACAGGAGTGTATAAGGCGATGTTAGTGGATGGGNNNATCAATCGGGTANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTGTTTCAACCAAATCAGCAATATNNNCGTAGGGCTGATGACGGTGGGATTGTAATGACTACCAATGCTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTACAATATCCTTTCACTCGTGACTACCATGCAGCTCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNCAAGCCTGTGATTCTTGGACAACGAGCGAGTGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGACTATTATGCAGCCCCTTTGAGCGATGGAACTTGGTCTNNNAGATTAGGTCTGGTCTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTTTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAACTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATAATTGGAATNNNTCTACGGACGGACTTNNNNNNNNNATTACGGGACAGGCTGGAAATACAACCGAACTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGGGCCGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTAGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCTACTCGTTTAGTGGATTGGGTACTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGTAGGTGCGGAAAAGTTTTATTGGATTGGTGTAGGAAATCAACCAGCAACTTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGACATCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGANNNNNNNNNNNNNNNNNNGCTTTTGGAAGCCATAATACCGGTTGTAACATTNNNCGGCTGAATCTACTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATACAATCTGCAATAACGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTCAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGGTCGATNNNGGGGCCACCCTGTTTACTACCGATATAAATGGTTTATTTTCCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGAAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTATTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGATCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGCNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTATCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAGTTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATCACCNNNGATTTTGGAGGCATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGAAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACAAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTAATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACAAATGAAAATTTAACAAACTCATTTACTNNNTCCACCTTTGTTAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGCTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAGGACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGTATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Can" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATCTTTAATACTACATCCTCCTTGGGCGCTGAACATATTGGANNNNNNGACTTTGAAGGAATTTCCGGAGCAGATGCATATTGTCAGNNNNNNAGCCACATTCCTTCTAATATTCCTNNNACCGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTTNNNNNNNNNGCTACTATGGTAGGACCAAATTCTACGGTAGGACAAAAAGACTGGGTATTTCTACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCATTCGTAATGACTACAAATAGTTCTGGTATGATTGATTTTTCAAATGGCNNNGCAGAACTGAATAATCCAATTTCCAAAGTTGCAACTGCCGCTCAGTGGACAGGCTTAAATTCGAATTGGACTGCTAGGTTGTCGTCTGGAGGGATCCCTNNNNNNNNNNNNCTTAACTGTGGTTCTTGGAATTCACCTGGTAGCNNNNNNNNNCGTGGAGTAATTGGAGTCTCGACTAGAACAGATTCAGAAATGCTAATTGCGGTTAATTCTATGTATNNNCAATATGAGCCATATTGTTACTATAGCTACNNNGTTTATGGTCCATATNNNAAATTAGGATTGGTTTGCGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCTGGAGCAGATGCATACTGTCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCTACTACGGTAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTGCGAGGAATTCAAAAATATNNNATAAGAGCAGAAGACGGTGCAACCATAATGATTACGAATAGTTCTGGTATGGTTGATTTGACATACGTTGGAAGTAGTTTGGAAAATTCATTTTCGCAAATAGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACTACCNNNTGGAAATCCGCCGGGGTTCCTNNNNNNNNNNNNGTTACTTGCAATACTTGGAATACTTCTAAAATTGATNNNCGTTATGGGGTATATGGCATGTCAAATAGTAAAGACTCAAATGCTCTTAAAGGANNNGAATCTTCTGGANNNACATTTGTGACGTCTTGTTCCAATAAATTTACTTCCTATGGTAACTATNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TATATCTTTNNNACAACATCGTCTTTTGGCACTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCGGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAACGTCCCTGGCACAGGAATATACAAGGCAATGTTAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACAGTAGGCCCAAATTCCACGGTAGGACAAGTAAATTGGGTGTTCAAGCCAAATCAAAAATATNNNCAAAGAGCAGAAGACGGCGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTGCAGGTGGTNNNGCAAGACTGGAAAATCCATTTACTCAAGTTAAAGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTCTGGTCTGTATAGAGCAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATACTGTCAGGCAAATATTCCAACATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAATGTATNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGAATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATCTTTNNNGCAACATCGTCATTTGGCGCTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCAGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAGTGTACCTAGTACAGGAATATACAAAGCAATGATAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACGGTAGGTCCGAACTCCATCGTAGGACAAGTAAATTGGGTGTTCCAACCGAATCAGCAATACNNNCGTAGAGCTGATGATGGTGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTAGAAAATTCGTTTGCACTCAAAGGGGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTTTGGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGCTATAATGGANNNNNNAACTTAGATGGAATTTCTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACGATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAGCTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGAGCTGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTCGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCANNNNNNNNNATCGATTGGATTCTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGGAGGCGCGGAAAAGTTCTATTGGATTGGTGTAGGAAATCAGCCAGCAACCTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGGGAGCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGANNNNNNNNNNNNNNNNNNGCTTTTGGAAGCCATAATACCGGTTGTAACATTNNNCGGCTGAATCTACTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATGCAATCTGCAATAATGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTTAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGATCGATNNNGGGGCCACCCTGTTTACTACCGATGCAAATGGCTTATTTTTCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGCAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTATTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGATCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGCNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTATCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAATTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATTACCNNNGATTTGGGAGGTATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGGAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTAGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACGAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTGATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACGAATGAAAATTTAACAAATCCATTTACTNNNTCCACCTTTGTCAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGTTTACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGACACTGGGTGTTGGCGAATACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Bra" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATTTTTNNNACTACATCGTCTTTCGGTGTTTTTCACAATGGANNNNNNAATTTTGGAGGAATATCTGGAGCGGATGCCTTTTGTCAGNNNNNNAGCCATATTCCTTCGAACATTCCTAGTAGAGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACAGCAGGACAAAAGGACTGGGTGTTTCAACCGGACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCAAACGTAATGTTTACAAATAGTTCTGGTATGATCGATTTTCAAAGTGGTNNNAAAAAATTAGAAAATCCATTTACCCAAGTTAAAGAATCCGGGCAATGGACTGCTTTGAATACGAATTGGACGACTNNNTGGACATCTAACGGGTTCCCANNNNNNNNNNNNTCTACTTGTAACTCTTGGAACAGTGGCGCTTTAAATNNNGATTTTGGAATATTTGGAAGTTCAACTAGAACGGATTCAGATATTCTTGCAGCTTTGATTTCTACTAACGAACAGGTTGGAACTTCTTGTTCTCTATCTATTGGATATTATGGCCCATATNNNAATTTAGGTTTGGTTTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCCGGAGCGGATGCATACTGCCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACAGTAGGACAAAAAGACTGGGTATTTCTACCGAATCATAAATATNNNATAAGAGACTATGATGATGCGCTCATTATGACTACGAATAGTTCCGGAATGTTTGATTTTACAAATAATNNNAGAGAATTAGAAAATTCATTTTCGCAAATTGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACCATTNNNTGGACATCGGCAGGGGTTCCTGGACGAGAACCGATTATTTGTAACTCTTGGACTACTTCTGATAATTCTNNNATTTATGGAGTATACGGCATGTCAAATCGTAAAGACTCAAATGTTCTTAAAGCAGCAGAATCTAATGGANNNCAATTCACTGCGGCTTGTTCCCTTAAATTTACTTCCTATGGTAATTACNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TATATCTTTNNNACAACATCGTCTTTTGGCACTGTTCACAATGGANNNNNNGATTTTGGAGGAATTTCGGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAACGTCCCTGGCACAGGAATATACAAGGCAATGTTAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACAGTAGGCCCAAATTCCACGGTAGGACAAGTAAATTGGGTGTTCAAGCCAAATCAAAAATATNNNCAAAGAGCAGAAGACGGTGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTGCAGGTGGTNNNGCAAGACTGGAAAATCCATTTACTCAAGTTAAAGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTCTGGTTTGTATAGAGCAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAATGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATATTGTCAGGCAAATATTCCAAGATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAATGTGTNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGGATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATTTTTNNNGCAACATCGTCATTTGGCGCTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCAGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAGTGTACCTAGTACAGGAATATACAAAGCAATGATAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACGGTAGGTCCGAACTCCACGGTAGGACAAGTAAATTGGGTGTTCCAACCGAATCAGCAATACNNNCGTAGAGCTGATGATGGTGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTAGAAAATTCGTTTGCACTCAAAGGGGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGGCTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTTTGGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTCTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGACACNNNNNNNNNNAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGTACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTTAGGAGCTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATAATTGGAATNNNTCTGCGGACGGACTTNNNNNNNNNATTACGGGACAGGCTGGAAATACAACCGAACTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGCGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGGGCCGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTAGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCTACTCGTTTAGTGGATTGGGTACTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGTAGGTGCGGAAAAGTTTTATTGGATTGGTGTAGGAAATCAACCAGCAACTTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGACATCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGANNNNNNNNNNNNNNNNNNGCTTTTGGAAGCCATAATACCGGTTGTAACATTNNNCGGCTGAATCTACTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACAAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTAATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACAAATGAAAATTTAACAAACTCATTTACTNNNTCCACCTTTGTTAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGCTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAGGACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Pom" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATCTTTAATACTACATCCTCCTTGGGCGCTGAACATATTGGANNNNNNGACTTTGAAGGAATTTCCGGAGCAGATGCATATTGTCAGNNNNNNAGCCACATTCCTTCTAATATTCCTNNNACCGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTTNNNNNNNNNGCTACTATGGTAGGACCAAATTCTACGGTAGGACAAAAAGACTGGGTATTTCTACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCATTCGTAATGACTACAAATAGTTCTGGTATGATTGATTTTTCAAATGGCNNNGCAGAACTGAATAATCCAATTTCCAAAGTTGCAACTGCCGCTCAGTGGACAGGCTTAAATTCGAATTGGACTGCTAGGTTGTCGTCTGGAGGGATCCCTNNNNNNNNNNNNCTTAACTGTGGTTCTTGGAATTCACCTGGTAGCNNNNNNNNNCGTGGAGTAATTGGAGTCTCGACTAGAACAGATTCAGAAATGCTAATTGCGGTTAATTCTATGTATNNNCAATATGAGCCATATTGTTACTATAGCTACNNNGTTTATGGTCCATATNNNAAATTAGGATTGGTTTGCGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCTGGAGCAGATGCATACTGTCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCTACTACGGTAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTGCGAGGAATTCAAAAATATNNNATAAGAGCAGAAGACGGTGCAACCATAATGATTACGAATAGTTCTGGTATGGTTGATTTGACATACGTTGGAAGTAGTTTGGAAAATTCATTTTCGCAAATAGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACTACCNNNTGGAAATCCGCCGGGGTTCCTNNNNNNNNNNNNGTTACTTGCAATACTTGGAATACTTCTAAAATTGATNNNCGTTATGGGGTATATGGCATGTCAAATAGTAAAGACTCAAATGCTCTTAAAGGANNNGAATCTTCTGGANNNACATTTGTGACGTCTTGTTCCAATAAATTTACTTCCTATGGTAACTATNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TATATCTTTNNNACAACATCGTCTTTTGGCACTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCGGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAACGTCCCTGGCACAGGAATATACAAGGCAATGTTAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACAGTAGGCCCAAATTCCACGGTAGGACAAGTAAATTGGGTGTTCAAGCCAAATCAAAAATATNNNCAAAGAGCAGAAGACGGCGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTGCAGGTGGTNNNGCAAGACTGGAAAATCCATTTACTCAAGTTAAAGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTCTGGTCTGTATAGAGCAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATACTGTCAGGCAAATATTCCAACATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTTTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATACAGCGATTGGAGAACTGTAGCTACTTATGGTGAAATGTGTNNNNNNCATGATGTTCCCAGATTTGGTTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGGATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATCTTTNNNGCAACATCGTCATTTGGCGCTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCAGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAGTGTACCTAGTACAGGAATATACAAAGCAATGATAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACGGTAGGTCCGAACTCCATCGTAGGACAAGTAAATTGGGTGTTCCAACCGAATCAGCAATACNNNCGTAGAGCTGATGATGGTGCGATTGTAATGATTACCAATGGTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTAGAAAATTCGTTTGCACTCAAAGGGGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCCGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTTTGGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTCTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTNNNGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAGCTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATCATTGGAATNNNTCTGCGGACGGACTTNNNNNNNNNATTACGGGACAGACTGGAAATACAACCGAGCTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGAGCTGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTCGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCANNNNNNNNNATCGATTGGATTCTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGGAGGCGCGGAAAAGTTCTATTGGATTGGTGTAGGAAATCAGCCAGCAACCTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGNNNTGAGCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGANNNNNNNNNNNNNNNNNNGGAGCTTTTGGAAGCCATAATACCGGTTGTAACNNNATTCGGCTGAAT
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATGCAATCTGCAATAACGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTTAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGATCGATNNNGGGGCCACCCTGTTTACTACCGATGCAAATGGCTTATTTTTCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGCAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTATTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGAGCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGCNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTATCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAATTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATTACCNNNGATTTGGGAGGTATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGGAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTACGGCAGACGAATATTGTAATGTAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAGTAGCTACCGTTACGCCGAATATCGGGGACGGACAAGAGGATTGGATTTTTAAACCGAATACAGAATATNNNAGAAGAACTGACGGAGTTACAAAAGTGATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNACGAATGAAAATTTAACAAATCCATTTACTNNNTCCACCTTTGTCAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGTTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAAGACGCTAATATTGTTTATGGAGGTACATTCGGGGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Cop" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATTTTTNNNACTACATCGTCTTTCGGTGTTTTTCACAATGGANNNNNNAATTTTGGAGGAATATCTGGAGCGGATGCCTTTTGTCAGNNNNNNAGCCATATTCCTTCGAACATTCCTAGTAGAGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACGGTAGGACAAAAGGACTGGGTGTTTCAACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGTGCAAACGTAATGTTTACAAATAGTTCTGGTATGATCGATTTTCAAAGTGGTNNNAAAAAATTAGAAAATCCATTTACCCAAGTTAAAGAATCCGGGCAATGGACTGCTTTGAATACGAATTGGACGACTNNNTGGACATCTAACGGGTTCCCANNNNNNNNNNNNTCTACTTGTAACTCTTGGAACAGTGGCGCTTTAAATNNNGATTTTGGAATATTTGGAAGTTCAACTAGAACGGATTCAGATATTCTTGCAGCTTTGATTTCTACTAACGAACAGGTTGGAACTTCTTGTTCTCTATCTATTGGATATTATGGCCCATATNNNAATTTAGGTTTGGTTTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCAGGAGCGGATGCATACTGCCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCAACGACGATAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTTCTACCGAATCATAAATATNNNATAAGAGACTATGATGATGCGCTCATTATGACTACGAATAGTTCCGGAATGTTTGATTTTACAAATAATNNNAGAGAATTAGAAAATTCATTTTCGCAAATTGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACCATTNNNTGGACATCAGCAGGGGTTCCTGGACGAGAACCGATTATTTGTAACTCTTGGACTACTTCTGATAATTCTNNNATTTATGGAGTATACGGCATGTCAAATCGTAAAGACTCAAATGTTCTTAAAGCAGCAGAATCTAATGGANNNCAATTCACAGCGGCTTGTTCCCTTAAATTTACTTCCTATGGTAATTACNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TACATATTTNNNGTTACTTCCAGCAATGGAGAATATCATAACGCANNNNNNAACTTTGGAGGAATTGCAGGAGCGGATGCTTATTGTCAGNNNNNNAGTCGTATTCCTTCGAATATTCCAAATAATAGAATTTACAAGGCGATGTTAGTGGATGGGNNNATCAATCGGATANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTATTCCGACCAAATCAGCAGTATNNNCAAAGAGCGGAAGACGGTGCGATCGTAATGACTACCAATAGTTCCGGTATGTTTGATTTTTCAAATGATNNNGCAAGATTACAAAATCCTTTTACTAGTAACCCTCGTGCAGCTCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNAAAACCTGTGATTCTTGGACAACGAGCGAGTGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGACTATCATGCAGCCCCTTTGGGCGATGGAACTTGGTCTNNNAATTTAGGTCTGGTCTGTGTGGAAGAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATATTGTCAGGCAAATATTCCAAGATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAGTGTGTNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGAATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATCTATNNNGTGACTTCGGTTTCCGGTGTGGGTCACAATGGANNNNNNAACTTTGGAGGAATTGCAGGAGCGGATGCTTATTGTCAGNNNNNNAGCAATATTCCAGGAAATCTTTCTCCAACAGGAGTGTATAAGGCGATGTTAGTGGATGGGNNNGTCAATCGGGTANNNNNNNNNGCTACTACTGTAGGTCCTAATTCAACAGTAGGACAAAAAGACTGGGTGTTTCAACCAAATCAGCAATATNNNCGTAGGGCTGATGACGGTGGGATTGTAATGACTACCAATGCTTCCGGTATGTTTGATTTTTCAAATGGTNNNGCAAGATTACAAAATCCTTTCACTCGTGACTACCATGCAGCTCATTGGTCGAGTATCAACATAGATTGGACGACTNNNTGGGCGGTAAATGGTATTCCTNNNNNNNNNNNNCAAGCCTGTGATTCTTGGACAACGAGCGAGTGGATACCTAAGTATGCAATTTATGGAATGTCGGATCAAGTAAATGAAAATATACTAACTGCTAAGATTAATTTTACAAAACCTTGTTCGGACTATTATGCAGCCCCTTTGAGCGATGGAACTTGGTCTNNNAGATTAGGTCTGGTCTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTTTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATCCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAACTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATAATTGGAATNNNTCTACGGACGGACTTNNNNNNNNNATTACGGGACAGGCTGGAAATACAACCGAACTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGGGCCGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATTTANCGGGAACTTATAAGGCTTTATTAGCCGCAATGNNNNNNGGTACAAGAGAANNNNNNNNNGCGGTTTTTGTTGGAGATGGATCTACTCGTTTAGTGGATTGGGTACTTTATCCAAACAAACAATATCGTNNNAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAAAACNNNNNNNNNNNNNNNTCAGTCGACGTAGGTGCGGAAAAGTTTTATTGGATTGGTGTAGGAAATCAACCAGCAACTTTTGATTGGGAAGTTTCACTCAATTGTNNNNNNNNNNNNNNNNNNAACGATTGGAATTCTNNNAATAATGCTGTCAATTTTGCGATCGATGGTACGACATCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGAGCTNNNNNNNNNNNNNNNNNNTTTGGAAGCCATAATACCGGTTGTAACATACGGNNNCTGAATCTACTCTGTGTAAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATACAATCTGCAATAACGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTCAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGGTCGATNNNGGGGCCACCCTGTTTACTACCGATATAAATGGTTTATTTTCCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGAAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTGTTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGATCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGTNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTATCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAGTTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATCACCNNNGATTTTGGAAGCATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGGAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACAAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTAATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACAAATGAAAATTTAACAAACTCATTTACTNNNTCCACCTTTGTTAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGCTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAGGACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGACCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>
    <alignment id="Lai" dataType="nucleotide">
        <sequence>
            <taxon idref="CN"/>
            TATATTTTTNNNACTACATCGTCTTTCGGTGTTTTTCACAATGGANNNNNNAATTTTGGAGGAATATCTGGAGCGGATGCCTTTTGTCAGNNNNNNAGCCATATTCCTTCGAACATTCCTAGTAGAGGAATATACAAGGCAATGATCGTAGACGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTTTAGTAGGACCGAATTCTACGGTAGGACAAAAGGACTGGGTGTTTCAACCGAACCAACAGTATNNNCGTAGAGCAGAAGACGGCGCAAACGTAATGTTTACAAATAGTTCTGGTATGATCGATTTTCAAAGTGGTNNNAAAAAATTGGAAAATCCATTTACCCAAGTTAAAGAATCCGGTCAATGGACTGCTTTGAATACGAATTGGACGACTNNNTGGACATCTAACGGGTTCCCANNNNNNNNNNNNTCTACTTGTAACTCTTGGAACAGTGGCGCTTTAAATNNNGATTTTGGAATATTTGGAAGTTCAACTAGAACGGATTCAGATATTCTTGCAGCTTTGATTTCTACTAACGAACAGGTTGGAACTTCTTGTTCTCTATCTATTGGATATTATGGCCCATATNNNAATTTAGGTTTGGTTTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="CC"/>
            TATATATTCNNNGTTACTTCTAGTACAGAAGAATGGCACGACGGANNNNNNAATTTTGGAGGAATTGCAGGAGCGGATGCATACTGCCAGNNNNNNAGTCAAGTTCCTACAAACCTTCCTTCGGGGGGAATATACAAGGCAATGCTCGTGGACGGANNNGTCAATAGAGTTNNNNNNNNNGCAACGACGATAGGACCAAATTCTACAGTAGGACAAAAAGACTGGGTATTTCTACCGAATCATAAATATNNNATAAGAGACTATGATGATGCGCTCATTATGACTACGAATAGTTCCGGAATGTTTGATTTTACAAATAATNNNAGAGAATTAGAAAATTCATTTTCGCAAATTGCANNNGCTGCACAATGGACGGGTTTAAATTCAGATTGGACCATTNNNTGGACATCAGCAGGGGTTCCTGGACGAGAACCGATTATTTGTAACTCTTGGACTACTTCTGATAATTCTNNNGTTTATGGAGTATACGGCATGGCAAATCGTAAAGACTCAAATGTTCTTAAAGCAGCAGAATCTAATGGANNNCAATTCACAGCGGCTTGTTCCCTTAAATTTACTTCCTATGGTAATTACNNNAGATTAGGTTTAGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="FC"/>
            TATATCTTTNNNACAACATCGTCTTTTGGCACTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCGGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAACGTCCCTGGCACAGGAATATACAAGGCAATGTTAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACAGTAGGCCCAAATTCCACGGTAGGACAAGTAAATTGGGTGTTCAAGCCAAATCAAAAATATNNNCAAAGAGCAGAAGACGGTGCGATTGTAATGACTACCAATGGTTCCGGTATGTTTGATTTTGCAGGTGGTNNNGCAAGACTGGAAAATCCATTTACTCAAGTTAAAGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGACTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTCTGGTTTGTATAGAGCAA
        </sequence>
        <sequence>
            <taxon idref="EC"/>
            TTCCTATTCNNNNNNNNNNNNGTTACTCCAACGGCGCATAACGGANNNNNNGACTGGGGTGGAGTTAGCGGCGCAGACGCATATTGTCAGGCAAATATTCCAAGATCCATTGCAGGAACTGGANNNNNNCCTTACAAAGCGATGTTAGTAGCTCCTACTAGANNNNNNNNNNNNNNNAGACAAGCTACAACTAATCCGAATGTAGGAGATGGTCAAATCGATTGGGTCTTTAAACCAAACACGGAATATNNNAGAAGAGCCGATGGGATTACAAAAGTAATGACTACCAATTCCAAAGGTTTATTCGATTTTNNNNNNTCAAAAGGAAATCTAACCAATTCATTTGAAGGATCATTCGACGCATACATTTGGACAGGGTTATATAGTGATTGGAGAACTGTAGCTACTTATGGTGAAATGTGTNNNNNNCATGATGTTCCCAGATTTGGCTTAACAACGGATACATCCGGTTGGGAAGGTAATGGTAATTCTGGAAGACTTGGAAATGCAAAGAGTATTACAAGCCGCTCTATTTCCCATACAACTGATGCCTGTTGGCATAATGTCCATACATTTACTTCTACTACTGTAACAATAAACTTTGGAATTCTATGCGTTGAACAA
        </sequence>
        <sequence>
            <taxon idref="FN"/>
            TATATTTTTNNNGCAACATCGTCATTTGGCGCTGTTCACAATGGANNNNNNAATTTTGGAGGAATTTCAGGAGCGGATGCGTTTTGTCAGNNNNNNAGTCATATTCCTTCGAGTGTACCTAGTACAGGAATATACAAAGCAATGATAGTGGATGGANNNGTCAATAGAGTGNNNNNNNNNGCTACTACGGTAGGTCCGAACTCCACGGTAGGACAAGTAAATTGGGTGTTCCAACCGAATCAGCAATACNNNCGTAGAGCTGATGATGGTGCGATTGTAATGACTACCAATGGTTCCGGTATGCTTGATTTTTCAAATGGTNNNGCAAGATTAGAAAATTCGTTTGCACTCAAAGGGGAGTCAGGTCAATGGACAGGTTTAAATTCGGATTGGACTACTNNNTGGACATCTGGAGGTGTACCGNNNNNNNNNNNNATGACTTGTAGTTCTTGGACTAGTTCTGCTCTTAATNNNCTTTTTGGGCTGTTTGGAAGTTCGACTAGTACAGATTCAGAAATTCTTAAAGCTAGTGCTTCTACTGGAGGAAACACTACATCTTCTTGTTCAAGTACTCGCACATTTTATGGTCCATATNNNAATTTGGGTTTGGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="AN"/>
            NNNACTTTTNNNATCGCTACCAATAACGGGGCGGGTTATAATGGANNNNNNAACTTAGGTGGAATTTCTGGAGCAGACGCAAAGTGTGCCNNNNNNNNNGCTGCAAAATCTTCTAGTNNNTTAACGGGAGCTTATAAGGCTTTGATTGTCGACGGTCCAACGGGAAGANNNNNNNNNNNNCAAGTTATTTCTGCTTTAGATGGATCAGTAGATAAAAAAGATTGGGTCCTTTATTCAAACAAACAATACNNNCGTAGAAGCGACGGCACTACAATTACCTTTACTACAAACGCAAATTCTATTGTTATAGATAATCTTCAANNNNNNNNNNNNNNNAATGGAATTGATTCAGGAGCTCAAAAATTCTTTTGGAACGGTTTAGGAAACAACNNNGTTGGATTTCTTTGGGAGCCATTATCAAACNNNNNNNNNNNNNNNNNNTGTAATAATTGGAATNNNTCTGCGGACGGACTTNNNNNNNNNATTACGGGACAGGCTGGAAATACAACCGAACTTCAAGCAGATNNNATAACTCCAGAAGGANNNNNNNNNNNNNNNNNNGCTTTTACCGTTGATAACCATGCTTGTAATACCNNNAATCTAAATCTTCTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="BN"/>
            NNNACCTTCNNNGTTGCTACAAATAATGGGGCCGGTTATGACGGANNNNNNAATTTAGGTGGAATCTCAGGTGCGGACGCAAAATGTGCCNNNNNNNNNGCTGCAAAATCCTCTAATNNNTTAACGGGAACTTATAAGGCTTTATTAGCCGCANNNNNNATGGGTACAAGANNNNNNNNNGAAGCGGTTTTTGTTGGAGATGGATCTACTCGTTTAGTGGATTGGGTACTTTATCCAAACAAACAATATNNNCGTAGAAGTGACGGAACTACAACCACGTTTACTACAAATGCAAACTCAGTTGTAACTGCAAATTTACAANNNNNNNNNNNNNNNAACTCAGTCGACGTAGGTGCGGAAAAGTTTTATTGGATTGGTGTAGGAAATCAACCAGCAACTTTTGATTGGGAAGTTTCACTCAATNNNNNNNNNNNNNNNNNNTGTAACGATTGGAATNNNTCTAATAATGCTGTCAATTTTGCGATCGATGGTACGACATCATCCAATGAAGTATTTGCCGGAGATGGGGCAACTCCTGGAGGANNNNNNNNNNNNNNNNNNGCTTTTGGAAGCCATAATACCGGTTGTAACATTNNNCGGCTGAATCTACTCTGTGTAGAACAG
        </sequence>
        <sequence>
            <taxon idref="DC"/>
            TATATTTATNNNTTGGCTCCTCTTTCACCAATCGGTCATAATGGANNNNNNAACTACGGTGGAATTGCCGGTATGGATACAATCTGCAATAACGATACAATGAAACCGGTAGAGTTACTTGGAAAAGGTACTTACAAAGCAATGGCAGTGGATCAATCCATAACCATTCCTNNNNNNNNNTCTACTCCAGCCACAAGACGTGCTACTCCTAACCCTCTCAACTGGGTTTTAAGACCAAATACCACTTATNNNAAAAGGGTCGATNNNGGGGCCACCCTGTTTACTACCGATATAAATGGTTTATTTTCCAGCATGACTAACNNNNNNNNNNNNAGATTTGGAGAAGAGACCGAAAATAACGGCTATATTTGGACAGGACTTAACTCTGATTTTACTACCNNNNNNNNNGCAACCGGATACAACNNNNNNNNNNNNNNNNNNTGTAACAATTGGAAAAGTAGCGCATCCAATNNNNNNNNNNNNTATTTAGGTAAAATCGGAAGCGCGAATACTAATGTAAAGTCGGTCGCACTATCTTATACCNNNNNNNNNNNNNNNAATAGACCGTGCGATCAGACCACAAATAGTTCCGAGNNNCCGATCCGAGTCGTTTGTGTAGAACAA
        </sequence>
        <sequence>
            <taxon idref="DN"/>
            TATATATTTNNNNNNNNNNNNCTTGCACCGGCACATCATGGAGGCNNNNNNNNNTTAGGAGGAATCTACGGAGCAGACGAATGGTGTATGCGTAAGGTCCCTGCCGATTTAAAAGGGAGCCCTTACTATTCCTACAAAGCACTGCTGGCTGATGGTATCAATNNNNNNNNNNNNNNNCGTAGAGCCAGTGTTACTGGTAATGCAGGAGATGGTCAAATCAATTGGGTATTACAAGCAAGTACCGTTTATAGCCAAGCCACAACAGGTACACCTACGATTGGAACTACAAATAGTAAAAAGTTATTCACCTTCCCTTTAACGAATAAAATTCGTCCAGACAGTATCACCNNNGATTTTGGAGGCATAACTTGGACAGGCCTCAATCCAAATTGGACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTTACAATTGTAATAACTGGACAGACGGANNNNNNNNNNNNGCCGACATCAATGTTGGANNNACGATCGGAAACTACAACGCCACATCTTCCAATGCAATTTTCGATTCTGCCCTAATTGTACCAGGANNNCTCATAACATGCAGTTCTGGAGGTNNNNNNNNNNNNNNNAAGTTATATTGTGTGGAACAA
        </sequence>
        <sequence>
            <taxon idref="EN"/>
            ACCTTATTTNNNNNNNNNNNNGTAGCGCCTGGTTTTCATAATGGTGGATTTTCCTACGAAGGAATCAGTGCGGCAGACAAATATTGTAATGCAAACATTCCTGCAGGTTCTTTTGCAGCAGCAGGTGCCCCTTATAAAGCCTTGTTAGCAAATAACTTAGGAACGAATTTATATAAAAGAATAGCTACCGTTACTCCAAATGTAGGAGATGGACAGGTTGATTGGATTTTTAAACCAAATACAGAGTATNNNAGAAGAATAGATGGAGTCACAAAAGTAATGACTACCAATTCGGTTGGTTTATTCGATTTTNNNNNNACAAATGAAAATTTAACAAACTCATTTACTNNNTCCACCTTTGTTAATATTTGGACAGGACTCAATCCGGACTGGACTACTCGTGGTGCTAACNNNGTTAGAACTNNNNNNGACCAGGGAAATTGTATCGGATGGTATGTGGGTGTTGGTGAGGACGCTAATATTGTTTATGGAGGTACATTCGGAGTTGCGAATATGATAAACTCACATGCGATCTTCGACAATTTTGCCACCTGTGATAGTNNNACCGCAGGAGTTACTAGTCAAGGGCCTGCAGCTCCTTTAAGCATCCTATGCGTAGGTCAA
        </sequence>
    </alignment>

    <patterns id="patterns.1" from="1">
        <alignment idref="Har"/>
    </patterns>

    <patterns id="patterns.2" from="1">
        <alignment idref="Gri"/>
    </patterns>

    <patterns id="patterns.3" from="1">
        <alignment idref="Can"/>
    </patterns>

    <patterns id="patterns.4" from="1">
        <alignment idref="Pom"/>
    </patterns>

    <patterns id="patterns.5" from="1">
        <alignment idref="Bra"/>
    </patterns>

    <patterns id="patterns.6" from="1">
        <alignment idref="Lai"/>
    </patterns>

    <patterns id="patterns.7" from="1">
        <alignment idref="Cop"/>
    </patterns>


    <constantSize id="constant.Coalescent" units="substitutions">
        <populationSize>
            <parameter id="constant.popSize" value="1.0" lower="0.0" upper="Infinity"/>
        </populationSize>
    </constantSize>

    <coalescentTree id="startingTree" rootHeight="1.0">
        <taxa idref="taxa.sub"/>
        <constantSize idref="constant.Coalescent"/>
    </coalescentTree>

    <argTreeModel id="argModel" partitionType="reassortment">
        <coalescentTree idref="startingTree"/>
        <rootHeight>
            <parameter id="argModel.rootHeight"/>
        </rootHeight>
        <nodeHeights internalNodes="true">
            <parameter id="argModel.internalNodeHeights"/>
        </nodeHeights>
        <nodeHeights internalNodes="true" rootNode="true">
            <parameter id="argModel.allInternalNodeHeights"/>
        </nodeHeights>
          <nodeRates internalNodes="true" leafNodes="true">
            <parameter id="argModel.rates"/>
        </nodeRates>
    </argTreeModel>

    <strictClockBranchRates id="branchRates">
        <rate>
            <parameter id="clock.rate" value="1.0" lower="0.0" upper="Infinity"/>
        </rate>
    </strictClockBranchRates>
 

    <gammaPrior id="rootHeightPrior" shape="0.01" scale="100.0" offset="0.0">
        <parameter idref="argModel.rootHeight"/>
    </gammaPrior>

    <argUniformPrior id="argUniformPrior">
        <argModel idref="argModel"/>
    </argUniformPrior>
    
    <poissonPrior id="reassortmentPrior" mean="2.0" offset="0.0">
        <argReassortmentNodeCount id="reassortCount">
			  <argModel idref="argModel"/>
		</argReassortmentNodeCount>
    </poissonPrior>
        
<!--  Patterns
1. Har
2. Gri
3. Can
4. Pom
5. Bra
6. Lai
7. Cop  
-->

    <hkyModel id="hky.1">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Har"/>
                <frequencies>
                    <parameter id="hky.frequencies.1" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
            <parameter id="hky.kappa.1" value="1.0" lower="0.0" upper="Infinity"/>
        </kappa>
    </hkyModel>

    <hkyModel id="hky.2">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Gri"/>
                <frequencies>
                    <parameter id="hky.frequencies.2" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
            <parameter id="hky.kappa.2" value="1.0" lower="0.0" upper="Infinity"/>
        </kappa>
    </hkyModel>

    <hkyModel id="hky.3">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Can"/>
                <frequencies>
                    <parameter id="hky.frequencies.3" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
            <parameter id="hky.kappa.3" value="1.0" lower="0.0" upper="Infinity"/>

        </kappa>
    </hkyModel>

    <hkyModel id="hky.4">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Pom"/>
                <frequencies>
                    <parameter id="hky.frequencies.4" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
 <parameter id="hky.kappa.4" value="1.0" lower="0.0" upper="Infinity"/>
            
        </kappa>
    </hkyModel>

    <hkyModel id="hky.5">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Bra"/>
                <frequencies>
                    <parameter id="hky.frequencies.5" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
 <parameter id="hky.kappa.5" value="1.0" lower="0.0" upper="Infinity"/>
            
        </kappa>
    </hkyModel>

    <hkyModel id="hky.6">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Lai"/>
                <frequencies>
                    <parameter id="hky.frequencies.6" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
             <parameter id="hky.kappa.6" value="1.0" lower="0.0" upper="Infinity"/>
        </kappa>
    </hkyModel>

    <hkyModel id="hky.7">
        <frequencies>
            <frequencyModel dataType="nucleotide">
                <alignment idref="Cop"/>
                <frequencies>
                    <parameter id="hky.frequencies.7" dimension="4"/>
                </frequencies>
            </frequencyModel>
        </frequencies>
        <kappa>
             <parameter id="hky.kappa.7" value="1.0" lower="0.0" upper="Infinity"/>
        </kappa>
    </hkyModel>


    <siteModel id="siteModel.1">
        <substitutionModel>
            <hkyModel idref="hky.1"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.1" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.1" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>
   </siteModel>

   <siteModel id="siteModel.2">
        <substitutionModel>
            <hkyModel idref="hky.2"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.2" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.2" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>
    </siteModel>

    <siteModel id="siteModel.3">
        <substitutionModel>
            <hkyModel idref="hky.3"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.3" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.3" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>
    </siteModel>

  <siteModel id="siteModel.4">
        <substitutionModel>
            <hkyModel idref="hky.4"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.4" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.4" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>

    </siteModel>

   <siteModel id="siteModel.5">
        <substitutionModel>
            <hkyModel idref="hky.5"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.5" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.5" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>

    </siteModel>

    <siteModel id="siteModel.6">
        <substitutionModel>
            <hkyModel idref="hky.6"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.6" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape  gammaCategories="4">
	    <parameter id="siteModel.alpha.6" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>

    </siteModel>

    <siteModel id="siteModel.7">
        <substitutionModel>
            <hkyModel idref="hky.7"/>
        </substitutionModel>
        <relativeRate>
            <parameter id="siteModel.mu.7" value="1.0" lower="0.0" upper="Infinity"/>
        </relativeRate>
	<gammaShape gammaCategories="4">
	    <parameter id="siteModel.alpha.7" value="0.5" lower="0.0" upper="Infinity"/>
	</gammaShape>

    </siteModel>


    <argTreeLikelihood id="treeLikelihood.1">
        <patterns idref="patterns.1"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.1"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

    <argTreeLikelihood id="treeLikelihood.2">
        <patterns idref="patterns.2"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.2"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>
   
    <argTreeLikelihood id="treeLikelihood.3">
        <patterns idref="patterns.3"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.3"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

     <argTreeLikelihood id="treeLikelihood.4">
        <patterns idref="patterns.4"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.4"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

    <argTreeLikelihood id="treeLikelihood.5">
        <patterns idref="patterns.5"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.5"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

    <argTreeLikelihood id="treeLikelihood.6">
        <patterns idref="patterns.6"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.6"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

    <argTreeLikelihood id="treeLikelihood.7">
        <patterns idref="patterns.7"/>
        <argTreeModel idref="argModel"/>
        <siteModel idref="siteModel.7"/>
        <strictClockBranchRates idref="branchRates"/>
    </argTreeLikelihood>

    <compoundParameter id="all.mu">
         <parameter idref="siteModel.mu.1"/>
         <parameter idref="siteModel.mu.2"/>
         <parameter idref="siteModel.mu.3"/>
         <parameter idref="siteModel.mu.4"/>
         <parameter idref="siteModel.mu.5"/>
         <parameter idref="siteModel.mu.6"/>
         <parameter idref="siteModel.mu.7"/>
    </compoundParameter>

    <compoundParameter id="all.kappa">
         <parameter idref="hky.kappa.1"/>
         <parameter idref="hky.kappa.2"/>
         <parameter idref="hky.kappa.3"/>
         <parameter idref="hky.kappa.4"/>
         <parameter idref="hky.kappa.5"/>
         <parameter idref="hky.kappa.6"/>
         <parameter idref="hky.kappa.7"/>
    </compoundParameter>

  <compoundParameter id="all.alpha">
         <parameter idref="siteModel.alpha.1"/>
         <parameter idref="siteModel.alpha.2"/>
         <parameter idref="siteModel.alpha.3"/>
         <parameter idref="siteModel.alpha.4"/>
         <parameter idref="siteModel.alpha.5"/>
         <parameter idref="siteModel.alpha.6"/>
         <parameter idref="siteModel.alpha.7"/>
  </compoundParameter>

  
    
    
    <distributionLikelihood id="mu.prior">
      <distribution>
	<logNormalDistributionModel meanInRealSpace="false">
	  <mean>
	    <parameter id="mu.mean" value="0.0"/>
	  </mean>
	  <precision>
	    <parameter id="mu.prec" value="1.0"/>
	  </precision>
	</logNormalDistributionModel>
      </distribution>
      <data>
	    <parameter idref="all.mu"/>
        </data>
    </distributionLikelihood>

    <distributionLikelihood id="kappa.prior">
      <distribution>
	<logNormalDistributionModel meanInRealSpace="false">
	  <mean>
	    <parameter id="kappa.mean" value="0.01"/>
	  </mean>
	  <precision>
	    <parameter id="kappa.prec" value="1.0"/>
	  </precision>
	</logNormalDistributionModel>
      </distribution>
      <data>
	   <parameter idref="all.kappa"/>
        </data>
    </distributionLikelihood>

    <distributionLikelihood id="alpha.prior">
      <distribution>
	<logNormalDistributionModel meanInRealSpace="false">
	  <mean>
	    <parameter id="alpha.mean" value="0.01"/>
	  </mean>
	  <precision>
	    <parameter id="alpha.prec" value="1.0"/>
	  </precision>
	</logNormalDistributionModel>
      </distribution>
      <data>
	   <parameter idref="all.alpha"/>
        </data>
    </distributionLikelihood>

    <compoundParameter id="all.hypermean">
      <parameter idref="mu.mean"/>
      <parameter idref="alpha.mean"/>
      <parameter idref="kappa.mean"/>
    </compoundParameter>

    <compoundParameter id="all.hyperprecision">
      <parameter idref="mu.prec"/>
      <parameter idref="alpha.prec"/>
      <parameter idref="kappa.prec"/>
    </compoundParameter>

    <normalPrior id="hypermean.prior" mean="0" stdev="100">
      <parameter idref="alpha.mean"/>
      <parameter idref="kappa.mean"/>
    </normalPrior>

    <gammaPrior id="hyperprecision.prior" offset="0" shape="0.01" scale="100.0">
      <parameter idref="all.hyperprecision"/>
    </gammaPrior>
      

    <operators id="operators" optimizationSchedule="log">
      
       <!-- Mu operators -->
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.1"/>
        </scaleOperator>
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.2"/>
        </scaleOperator>
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.3"/>
        </scaleOperator>
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.4"/>
        </scaleOperator>
         <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.5"/>
        </scaleOperator>
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.6"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.mu.7"/>
        </scaleOperator>

	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="mu.prec"/>
        </scaleOperator>


        <!-- Kappa operators -->
        <scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.1"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.2"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.3"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.4"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.5"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.6"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="hky.kappa.7"/>
        </scaleOperator>

	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="kappa.mean"/>
        </scaleOperator>
      	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="kappa.prec"/>
        </scaleOperator>
      
    
	<!-- Alpha operators -->
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.1"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.2"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.3"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.4"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.5"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.6"/>
        </scaleOperator>
	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="siteModel.alpha.7"/>
        </scaleOperator>

	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="alpha.mean"/>
        </scaleOperator>
      	<scaleOperator scaleFactor="0.75" weight="1">
            <parameter idref="alpha.prec"/>
        </scaleOperator>



	<!--Branch Length Operators -->
    <scaleOperator id="rootOperator" scaleFactor="0.5" weight="5">
		<parameter idref="argModel.rootHeight" />
	</scaleOperator>

	<uniformOperator weight="40">
		<parameter idref="argModel.internalNodeHeights" />
	</uniformOperator>

	<upDownOperator id="upDownOperator" scaleFactor="0.5" weight="5">
		<up>
			<parameter idref="argModel.allInternalNodeHeights"/>
		</up>
		<down>
			<compoundParameter idref="all.mu"/>
		</down>
	</upDownOperator>

	<!--Topology Operators -->

	<argEventOperator id="adder-non-joint" weight="30" addProbability="0.5" autoOptimize="false">
		<argTreeModel idref="argModel" />
		<internalNodes>
			<parameter idref="argModel.internalNodeHeights" />
		</internalNodes>
		<internalNodesPlusRoot>
			<parameter idref="argModel.allInternalNodeHeights" />
		</internalNodesPlusRoot>
		<nodeRates>
		        <parameter idref="argModel.rates" />
		</nodeRates>
	
		<uniformPartitionLikelihood id="partLike">
			<argModel idref="argModel"/>
		</uniformPartitionLikelihood>

	</argEventOperator>
	
	<argEventOperator id="adder-joint" weight="10" tossSize="2" addProbability="0.5" autoOptimize="false">
		<argTreeModel idref="argModel" />
		<internalNodes>
			<parameter idref="argModel.internalNodeHeights" />
		</internalNodes>
		<internalNodesPlusRoot>
			<parameter idref="argModel.allInternalNodeHeights" />
		</internalNodesPlusRoot>
		<nodeRates>
		        <parameter idref="argModel.rates" />
		</nodeRates>

		<uniformPartitionLikelihood idref="partLike"/>
	</argEventOperator>
	

    <argSwapOperator weight="10" type="narrowSwap">
		<argModel idref="argModel"/>
	</argSwapOperator>

	<argSwapOperator weight="4" type="bifurcationSwap">
		<argModel idref="argModel"/>
	</argSwapOperator>

	<argSwapOperator weight="5" type="reassortmentSwap">
		<argModel idref="argModel"/>
	</argSwapOperator>

	<!-- Partition Operators -->
	<argPartitionOperator weight="20" tossSize="1">
        	<argModel idref="argModel"/>
	</argPartitionOperator>

        
    </operators>

    <mcmc id="mcmc" chainLength="15000000" autoOptimize="true">
        <posterior id="posterior">
            <prior id="prior">
                <gammaPrior idref="rootHeightPrior"/>
		<argUniformPrior idref="argUniformPrior"/>
		<poissonPrior idref="reassortmentPrior"/>
		<distributionLikelihood idref="mu.prior"/>
		<distributionLikelihood idref="kappa.prior"/>
		<distributionLikelihood idref="alpha.prior"/>

		<normalPrior idref="hypermean.prior"/>
		<gammaPrior idref="hyperprecision.prior"/>

		<uniformPartitionLikelihood idref="partLike"/>

            </prior>
            <likelihood id="likelihood">
                <treeLikelihood idref="treeLikelihood.1"/>
                <treeLikelihood idref="treeLikelihood.2"/>
                <treeLikelihood idref="treeLikelihood.3"/>
                <treeLikelihood idref="treeLikelihood.4"/>
                <treeLikelihood idref="treeLikelihood.5"/>
                <treeLikelihood idref="treeLikelihood.6"/>
                <treeLikelihood idref="treeLikelihood.7"/>
            </likelihood>
        </posterior>
        <operators idref="operators"/>
        <log id="screenLog" logEvery="1000">
            <column label="Posterior" dp="4" width="12">
                <posterior idref="posterior"/>
            </column>
            <column label="ARG" dp="4" width="12">
                <argModel idref="argModel"/>
            </column>

        </log>
        <log id="fileLog" logEvery="1000" fileName="serovar.log">
            <posterior idref="posterior"/>
	    <prior idref="prior"/>
	    <likelihood idref="likelihood"/>

            <parameter idref="all.mu"/>
	    <parameter idref="all.kappa"/>
	    <parameter idref="all.alpha"/>
        
            <parameter idref="all.hypermean"/>
	    <parameter idref="all.hyperprecision"/>
	    
	    <parameter idref="argModel.rootHeight"/>
	    
            <argModel idref="argModel"/>

                <gammaPrior idref="rootHeightPrior"/>
                <argUniformPrior idref="argUniformPrior"/>
                <poissonPrior idref="reassortmentPrior"/>
                <distributionLikelihood idref="mu.prior"/>
                <distributionLikelihood idref="kappa.prior"/>
                <distributionLikelihood idref="alpha.prior"/>

                <normalPrior idref="hypermean.prior"/>
                <gammaPrior idref="hyperprecision.prior"/>

                <treeLikelihood idref="treeLikelihood.1"/>
                <treeLikelihood idref="treeLikelihood.2"/>
                <treeLikelihood idref="treeLikelihood.3"/>
                <treeLikelihood idref="treeLikelihood.4"/>
                <treeLikelihood idref="treeLikelihood.5"/>
                <treeLikelihood idref="treeLikelihood.6"/>
                <treeLikelihood idref="treeLikelihood.7"/>

        </log>

	<log id="timingLog" fileName="serovar.timing" logEvery="1000">
		<argTimingStatistic id="timeStat">
			<argTreeModel idref="argModel"/>
		</argTimingStatistic>
	</log>
        
        <logArgTree partition="0" logEvery="1000" nexusFormat="true" fileName="Har.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="1" logEvery="1000" nexusFormat="true" fileName="Gri.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="2" logEvery="1000" nexusFormat="true" fileName="Can.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="3" logEvery="1000" nexusFormat="true" fileName="Pom.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="4" logEvery="1000" nexusFormat="true" fileName="Bra.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="5" logEvery="1000" nexusFormat="true" fileName="Lai.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>
        <logArgTree partition="6" logEvery="1000" nexusFormat="true" fileName="Cop.trees">
            <argTreeModel idref="argModel"/>
        </logArgTree>

        <logArg logEvery="1000" format="compressedString" fileName="serovar.args">
            <argTreeModel idref="argModel"/>
        </logArg>
    </mcmc>

    <report>
        <property name="timer">
            <object idref="mcmc"/>
        </property>
    </report>

    <traceAnalysis fileName="serovar.log"/>
    <treeTraceAnalysis fileName="Har.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Gri.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Can.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Pom.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Bra.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Lai.trees" shortReport="false"/>
    <treeTraceAnalysis fileName="Cop.trees" shortReport="false"/>

    <argTraceAnalysis fileName="serovar.args"/>


</beast>
