<?xml version='1.0'?>
<patches>
  <!-- Amino Acid Patches -->
  <patch>
    <name>PEPTIDE</name>
    <applyto>*</applyto>
    <add>
       <atom>
          <name>N+1</name>
          <x>-1.252</x>
          <y>1.877</y>
          <z>1.023</z>
          <bond>C</bond>
       </atom>
       <atom>
          <name>C-1</name>
          <x>2.339</x>
          <y>0.216</y>
          <z>0.000</z>
          <bond>N</bond>
       </atom>
    </add>
  </patch>
  <patch>
    <name>ASH</name>
    <applyto>ASP</applyto>
    <add>
       <atom>
          <name>HD2</name>
          <altname>2HD</altname>
          <x>2.105</x>
          <y>-3.427</y>
          <z>1.930</z>
          <bond>OD2</bond>
       </atom>
       <dihedral>CB CG OD2 HD2</dihedral>
       <dihedral>CB CG OD1 HD1</dihedral>
    </add>
  </patch>
  <patch>
    <name>CYM</name>
    <applyto>CYS</applyto>
    <remove>HG</remove>
  </patch>
  <patch>
    <name>CYX</name>
    <applyto>CYS</applyto>
    <remove>HG</remove>
  </patch>
  <patch>
    <name>GLH</name>
    <applyto>GLU</applyto>
    <add>
       <atom>
          <name>HE2</name>
          <altname>2HE</altname>
          <x>1.977</x>
          <y>-4.036</y>
          <z>3.680</z>
          <bond>OE2</bond>
       </atom>
       <dihedral>CG CD OE1 HE1</dihedral>
       <dihedral>CG CD OE2 HE2</dihedral>
    </add>
  </patch>
  <patch>
    <name>HSE</name>
    <applyto>HIS</applyto>
    <remove>HD1</remove>
  </patch>
  <patch>
    <name>HSD</name>
    <applyto>HIS</applyto>
    <remove>HE2</remove>
  </patch>
  <patch>
    <name>HSP</name>
    <applyto>HIS</applyto>
  </patch>
  <patch>
    <name>HID</name>
    <applyto>HIS</applyto>
    <remove>HE2</remove>
  </patch>
  <patch>
    <name>HIE</name>
    <applyto>HIS</applyto>
    <remove>HD1</remove>
  </patch>
  <patch>
    <name>HIP</name>
    <applyto>HIS</applyto>
  </patch>
  <patch>
    <name>LYN</name>
    <applyto>LYS</applyto>
    <remove>HZ3</remove>
  </patch>
  <patch>
    <name>TYM</name>
    <applyto>TYR</applyto>
    <remove>HH</remove>
  </patch>
  <patch>
    <name>CTERM</name>
    <applyto>..[^35]$</applyto>
    <newname>C*</newname>
    <add>
       <atom>
          <name>OXT</name>
          <altname>O''</altname>
          <altname>OT2</altname>
          <x>-1.529</x>
          <y>1.858</y>
          <z>0.695</z>
          <bond>C</bond>
       </atom>
       <atom>
          <name>O</name>
          <altname>O'</altname>
          <altname>OT1</altname>
          <x>-2.185</x>
          <y>0.660</y>
          <z>-0.784</z>
          <bond>C</bond>
       </atom>
       <atom>
          <name>C-1</name>
          <x>2.339</x>
          <y>0.216</y>
          <z>0.000</z>
          <bond>N</bond>
       </atom>
    </add>
  </patch>
   <patch>
    <name>NEUTRAL-CTERM</name>
    <applyto>..[^35]$</applyto>
    <newname>NEUTRAL-C*</newname>
    <add>
       <atom>
          <name>OXT</name>
          <altname>O''</altname>
          <altname>OT2</altname>
          <x>-1.529</x>
          <y>1.858</y>
          <z>0.695</z>
          <bond>C</bond>
       </atom>
       <atom>
          <name>O</name>
          <altname>O'</altname>
          <altname>OT1</altname>
          <x>-2.185</x>
          <y>0.660</y>
          <z>-0.784</z>
          <bond>C</bond>
       </atom>
       <atom>
          <name>HO</name>
          <x>-2.998</x>
          <y>1.241</y>
          <z>-0.768</z>
          <bond>O</bond>
       </atom>
       <atom>
          <name>C-1</name>
          <x>2.339</x>
          <y>0.216</y>
          <z>0.000</z>
          <bond>N</bond>
       </atom>
    </add>
  </patch>
  <patch>
    <name>NTERM</name>
    <applyto>..[^35]$</applyto>
    <newname>N*</newname>
    <add>
       <atom>
          <name>H</name>
          <altname>HT1</altname>
          <altname>H1</altname>
          <altname>1H</altname>
          <x>0.934</x>
          <y>1.811</y>
          <z>0.000</z>
          <bond>N</bond>
       </atom>
       <atom>
          <name>H2</name>
          <altname>HT2</altname>
          <altname>2H</altname>
          <x>1.746</x>
          <y>0.653</y>
          <z>-0.817</z>
          <bond>N</bond>
       </atom>
       <atom>
          <name>H3</name>
          <altname>HT3</altname>
          <altname>3H</altname>
          <x>1.746</x>
          <y>0.653</y>
          <z>0.817</z>
          <bond>N</bond>
       </atom>
       <atom>
          <name>N+1</name>
          <x>-1.252</x>
          <y>1.877</y>
          <z>1.023</z>
          <bond>C</bond>
       </atom>
    </add>
  </patch>
  <patch>
    <name>NEUTRAL-NTERM</name>
    <applyto>..[^35]$</applyto>
    <newname>NEUTRAL-N*</newname>
    <add>
       <atom>
          <name>H</name>
          <altname>HT1</altname>
          <altname>H1</altname>
          <altname>1H</altname>
          <x>0.934</x>
          <y>1.811</y>
          <z>0.000</z>
          <bond>N</bond>
       </atom>
       <atom>
          <name>H2</name>
          <altname>HT2</altname>
          <altname>2H</altname>
          <x>1.746</x>
          <y>0.653</y>
          <z>-0.817</z>
          <bond>N</bond>
       </atom>
       <atom>
          <name>N+1</name>
          <x>-1.252</x>
          <y>1.877</y>
          <z>1.023</z>
          <bond>C</bond>
       </atom>
    </add>
    <remove>H3</remove>
  </patch>
  <patch>
    <name>HOH</name>
    <applyto>WAT</applyto>
  </patch>

<!-- Nucleic Acid Patches -->

  <patch>
    <name>RA</name>
    <applyto>A</applyto>
  </patch>
  <patch>
    <name>DA</name>
    <applyto>A</applyto>
    <add>
       <atom>
          <name>C2'</name>
          <x>5.230443</x>
          <y>2.095696</y>
          <z>2.779425</z>
          <bond>C1'</bond>
          <bond>C3'</bond>
          <bond>H2'</bond>
          <bond>H2''</bond>
       </atom>
       <atom>
          <name>H2''</name>
          <altname>HO'2</altname>
          <altname>H2'2</altname>
          <x>6.025106</x>
          <y>2.060820</y>
          <z>3.524673</z>
          <bond>C2'</bond>
       </atom>
    </add>
    <remove>O2'</remove>
  </patch>
  <patch>
     <name>DA3</name>
     <applyto>DA</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>DA5</name>
     <applyto>DA</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RA3</name>
     <applyto>A</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RA5</name>
     <applyto>A</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
    <name>RC</name>
    <applyto>C</applyto>
  </patch>
  <patch>
    <name>DC</name>
    <applyto>C</applyto>
    <add>
       <atom>
          <name>C2'</name>
          <x>5.230443</x>
          <y>2.095696</y>
          <z>2.779425</z>
          <bond>C1'</bond>
          <bond>C3'</bond>
          <bond>H2'</bond>
          <bond>H2''</bond>
       </atom>
       <atom>
          <name>H2''</name>
          <altname>HO'2</altname>
          <altname>H2'2</altname>
          <x>6.025106</x>
          <y>2.060820</y>
          <z>3.524673</z>
          <bond>C2'</bond>
       </atom>
    </add>
    <remove>O2'</remove>
  </patch>
  <patch>
     <name>DC3</name>
     <applyto>DC</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>DC5</name>
     <applyto>DC</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RC3</name>
     <applyto>C</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RC5</name>
     <applyto>C</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
    <name>RG</name>
    <applyto>G</applyto>
  </patch>
  <patch>
    <name>DG</name>
    <applyto>G</applyto>
    <add>
       <atom>
          <name>C2'</name>
          <x>5.230443</x>
          <y>2.095696</y>
          <z>2.779425</z>
          <bond>C1'</bond>
          <bond>C3'</bond>
          <bond>H2'</bond>
          <bond>H2''</bond>
       </atom>
       <atom>
          <name>H2''</name>
          <altname>HO'2</altname>
          <altname>H2'2</altname>
          <x>6.025106</x>
          <y>2.060820</y>
          <z>3.524673</z>
          <bond>C2'</bond>
       </atom>
    </add>
    <remove>O2'</remove>
  </patch>
  <patch>
     <name>DG3</name>
     <applyto>DG</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>DG5</name>
     <applyto>DG</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RG3</name>
     <applyto>G</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RG5</name>
     <applyto>G</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
    <name>DT</name>
    <applyto>T</applyto>
  </patch>
  <patch>
     <name>DT3</name>
     <applyto>T</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>DT5</name>
     <applyto>T</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
    <name>RU</name>
    <applyto>U</applyto>
  </patch>
  <patch>
     <name>RU3</name>
     <applyto>U</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>RU5</name>
     <applyto>U</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>5TERM</name>
     <applyto>*</applyto>
     <remove>O1P</remove>
     <remove>P</remove>
     <remove>O2P</remove>
     <add>
       <atom>
         <name>H5T</name>
         <x>2.5858</x>
         <y>1.9226</y>
         <z>0.0818</z>
         <bond>O5'</bond>
       </atom>
     </add>
  </patch>
  <patch>
     <name>3TERM</name>
     <applyto>*</applyto>
     <add>
       <atom>
         <name>H3T</name>
         <x>5.911984</x>
         <y>4.450161</y> 
         <z>3.797897</z>
         <bond>O3'</bond>
       </atom>
     </add>
   </patch>
</patches>
