Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: GMAP
Upstream-Contact: Thomas Wu <twu@gene.com>, Colin K. Watanabe <ckw@gene.com>
Source: http://research-pub.gene.com/gmap/

Files: *
Copyright: 2011-2014 Genentech, Inc.
License: other
 Permission is hereby granted, free of charge, to any person obtaining
 a copy of this software and associated documentation files (the
 "Package"), to use, copy, and distribute copies of the Package,
 without modifications, provided that the above copyright notice and
 this permission notice are included in all copies or substantial
 portions of the Package.  Distribution of this Package as part of a
 commercial software product requires prior arrangement with the
 Developers.
 .
 Permission is also hereby granted, free of charge, to any person
 obtaining a copy of this Package, to modify your copy or copies of the
 Package or any portion of it, provided that you use the modified
 Package only within your corporation or organization.  Distribution of
 a modified version of this Package requires prior arrangement with the
 Developers.
 .
 Genome databases, map files, and other result files produced as output
 from software in this Package do not automatically fall under the
 copyright of this Package, but belong to whoever generated them, and
 may be distributed freely.
 .
 IN NO EVENT SHALL GENENTECH, INC. BE LIABLE TO ANY PARTY FOR DIRECT,
 INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, OR OTHER
 LIABILITY, INCLUDING LOST PROFITS, ARISING FROM THE USE OF THIS
 SOFTWARE.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
 EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
 GENENTECH, INC. HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT,
 UPDATES, ENHANCEMENTS, OR MODIFICATIONS.
Comment:
 Some inspiration and code was taken from 
 https://github.com/lemire/FastPFor,
 covered by Apache-2.0 License

Files: src/getopt*
Copyright: 2002 Free Software Foundation, Inc.
License: LGPL-2.1+
 See `/usr/share/common-licenses/LGPL-2.1'.

Files: src/saca-k*
Copyright: 2012 Ge Nong <issng@mail.sysu.edu.cn>
License: MIT
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
 in the Software without restriction, including without limitation the rights
 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 .
 The above copyright notice and this permission notice shall be included in
 all copies or substantial portions of the Software.
 .
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 THE SOFTWARE.

Files: src/fastlog.h
Copyright: 2012 Paul Mineiro <paul@mineiro.com>
License: BSD-3-clause
 Redistribution and use in source and binary forms, with             
 or without modification, are permitted provided that the           
 following conditions are met:                                      
     .                                                                  
     * Redistributions of source code must retain the               
     above copyright notice, this list of conditions and            
     the following disclaimer.                                      
     .                                                                   
     * Redistributions in binary form must reproduce the            
     above copyright notice, this list of conditions and            
     the following disclaimer in the documentation and/or           
     other materials provided with the distribution.                
     .                                                                   
     * Neither the name of Paul Mineiro nor the names               
     of other contributors may be used to endorse or promote        
     products derived from this software without specific           
     prior written permission.                                      
     .                                                                   
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND             
 CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,        
 INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES              
 OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE            
 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER              
 OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,                
 INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES           
 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE          
 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR               
 BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF         
 LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT          
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY             
 OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE            
 POSSIBILITY OF SUCH DAMAGE.            

Files: debian/*
Copyright: 2011 Shaun Jackman <sjackman@debian.org>
           2012-2014 Andreas Tille <tille@debian.org>
           2014 Alex Mestiashvili <alex@biotec.tu-dresden.de>
License: ISC
 Permission to use, copy, modify, and/or distribute this software for any
 purpose with or without fee is hereby granted, provided that the above
 copyright notice and this permission notice appear in all copies.

