.. This (-*- rst -*-) format file contains commonly used link targets
   and name substitutions.  It may be included in many files,
   therefore it should only contain link targets and name
   substitutions.  Try grepping for "^\.\. _" to find plausible
   candidates for this list.  

.. NOTE: reST targets are
   __not_case_sensitive__, 

.. _Brain Connectivity Toolbox plugin: http://www.brain-connectivity-toolbox.net/
.. _ConnectomeWiki: http://www.connectome.ch/wiki
.. _EPD: http://www.enthought.com/products/epd.php
.. _Mayavi2: http://code.enthought.com/projects/mayavi/
.. _ConnectomeViewer: http://www.connectome.ch/viewer
.. _Connectomics: http://www.connectome.ch/
.. _Python: http://www.python.org
.. _Envisage: https://svn.enthought.com/enthought/wiki/Envisage
.. _ETS: http://code.enthought.com/projects/tool-suite.php
.. _Traits: https://svn.enthought.com/enthought/wiki/Traits
.. _TVTK: https://svn.enthought.com/enthought/wiki/TVTK
.. _Nifti: http://nifti.nimh.nih.gov/
.. _Gifti: http://www.nitrc.org/projects/gifti/
.. _TrackVis: http://trackvis.org/
.. _GraphML: http://graphml.graphdrawing.org/
.. _NetworkX: http://networkx.lanl.gov/

.. _dipy: http://nipy.org/dipy
.. _connectomeviewer: http://www.connectomeviewer.org/
.. _`connectomeviewer github`: http://github.com/LTS5/connectomeviewer

.. Documentation tools
.. _graphviz: http://www.graphviz.org/
.. _Sphinx: http://sphinx.pocoo.org/
.. _`Sphinx reST`: http://sphinx.pocoo.org/rest.html
.. _reST: http://docutils.sourceforge.net/rst.html
.. _docutils: http://docutils.sourceforge.net

.. Licenses
.. _GPL: http://www.gnu.org/licenses/gpl.html
.. _BSD: http://www.opensource.org/licenses/bsd-license.php
.. _LGPL: http://www.gnu.org/copyleft/lesser.html


.. _nipy: http://neuroimaging.scipy.org
.. _`Brain Imaging Center`: http://bic.berkeley.edu/

.. Documentation tools
.. _graphviz: http://www.graphviz.org/
.. _Sphinx: http://sphinx.pocoo.org/
.. _`Sphinx reST`: http://sphinx.pocoo.org/rest.html
.. _reST: http://docutils.sourceforge.net/rst.html
.. _docutils: http://docutils.sourceforge.net

.. Licenses
.. _GPL: http://www.gnu.org/licenses/gpl.html
.. _BSD: http://www.opensource.org/licenses/bsd-license.php
.. _LGPL: http://www.gnu.org/copyleft/lesser.html

.. Working process
.. _pynifti: http://niftilib.sourceforge.net/pynifti/
.. _nifticlibs: http://nifti.nimh.nih.gov
.. _`nipy launchpad`: https://launchpad.net/nipy
.. _launchpad: https://launchpad.net/
.. _`nipy trunk`: https://code.launchpad.net/~nipy-developers/nipy/trunk
.. _`nipy mailing list`: http://projects.scipy.org/mailman/listinfo/nipy-devel
.. _`nipy bugs`: https://bugs.launchpad.net/nipy

.. Code support stuff
.. _pychecker: http://pychecker.sourceforge.net/
.. _pylint: http://www.logilab.org/project/pylint
.. _pyflakes: http://divmod.org/trac/wiki/DivmodPyflakes
.. _virtualenv: http://pypi.python.org/pypi/virtualenv
.. _git: http://git.or.cz/
.. _flymake: http://flymake.sourceforge.net/
.. _rope: http://rope.sourceforge.net/
.. _pymacs: http://pymacs.progiciels-bpi.ca/pymacs.html
.. _ropemacs: http://rope.sourceforge.net/ropemacs.html
.. _ECB: http://ecb.sourceforge.net/
.. _emacs_python_mode: http://www.emacswiki.org/cgi-bin/wiki/PythonMode
.. _doctest-mode: http://www.cis.upenn.edu/~edloper/projects/doctestmode/
.. _bazaar: http://bazaar-vcs.org/
.. _nose: http://somethingaboutorange.com/mrl/projects/nose
.. _`python coverage tester`: http://nedbatchelder.com/code/modules/coverage.html

.. Other python projects
.. _numpy: http://www.scipy.org/NumPy
.. _scipy: http://www.scipy.org
.. _ipython: http://ipython.scipy.org
.. _`ipython manual`: http://ipython.scipy.org/doc/manual/html
.. _matplotlib: http://matplotlib.sourceforge.net
.. _pythonxy: http://www.pythonxy.com
.. _ETS: http://code.enthought.com/projects/tool-suite.php
.. _`Enthought Tool Suite`: http://code.enthought.com/projects/tool-suite.php
.. _python: http://www.python.org
.. _mayavi: http://mayavi.sourceforge.net/
.. _sympy: http://code.google.com/p/sympy/

.. Python imaging projects
.. _PyMVPA: http://www.pymvpa.org
.. _BrainVISA: http://brainvisa.info
.. _anatomist: http://brainvisa.info

.. Not so python imaging projects
.. _matlab: http://www.mathworks.com
.. _spm: http://www.fil.ion.ucl.ac.uk/spm
.. _eeglab: http://sccn.ucsd.edu/eeglab
.. _AFNI: http://afni.nimh.nih.gov/afni
.. _FSL: http://www.fmrib.ox.ac.uk/fsl
.. _FreeSurfer: http://surfer.nmr.mgh.harvard.edu
.. _voxbo: http://www.voxbo.org

.. General software
.. _gcc: http://gcc.gnu.org
.. _xcode: http://developer.apple.com/TOOLS/xcode
.. _mingw: http://www.mingw.org
.. _cygwin: http://cygwin.com
.. _macports: http://www.macports.org/

.. Functional imaging labs
.. _`functional imaging laboratory`: http://www.fil.ion.ucl.ac.uk
.. _FMRIB: http://www.fmrib.ox.ac.uk

.. Other organizations
.. _enthought: <http://www.enthought.com>
.. _kitware: http://www.kitware.com

.. General information links
.. _`wikipedia FMRI`: http://en.wikipedia.org/wiki/Functional_magnetic_resonance_imaging
.. _`wikipedia PET`: http://en.wikipedia.org/wiki/Positron_emission_tomography

.. Mathematical methods
.. _`wikipedia ICA`: http://en.wikipedia.org/wiki/Independent_component_analysis
.. _`wikipedia PCA`: http://en.wikipedia.org/wiki/Principal_component_analysis
