##gff-version 3
##sequence-region   Chr12:538789..638788 1 100000
# This output was generated with AUGUSTUS (version 2.6).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mario.stanke@uni-greifswald.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# nasonia version. Use default transition matrix.
# Looks like amel-subseq.fa is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 100000, name = Chr12:538789..638788) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene Chr12:538789..638788.g1
Chr12:538789..638788	AUGUSTUS	gene	1	8324	0.28	+	.	ID=Chr12:538789..638788.g1
Chr12:538789..638788	AUGUSTUS	mRNA	1	8324	0.28	+	.	ID=Chr12:538789..638788.g1.t1;Parent=Chr12:538789..638788.g1
Chr12:538789..638788	AUGUSTUS	CDS	1938	2262	0.58	+	1	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	2342	2451	1	+	0	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	3158	3302	0.95	+	1	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	3540	3660	0.87	+	0	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	3994	4107	0.57	+	2	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	6526	6597	0.98	+	2	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	6694	6974	1	+	2	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	7090	7394	1	+	0	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	7547	7790	1	+	1	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	7875	8094	1	+	0	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	CDS	8173	8324	1	+	2	ID=Chr12:538789..638788.g1.t1.cds;Parent=Chr12:538789..638788.g1.t1
Chr12:538789..638788	AUGUSTUS	stop_codon	8322	8324	.	+	0	Parent=Chr12:538789..638788.g1.t1
# protein sequence = [GLAQILYDYPIEDILIVEHLFLQWKPDLIKCIMEFLKPENVRIHIVGKLFENISDETEKWYGVKFKKEKISPDIINKW
# INAGLNPDLKLPPKNEFIPEKFDIKPIGDKTSKFPVIIEDTSLIRLWFKQDEEFLIPKANLFLDFVSPLAYLDPLSYNLTYIFVLLFRDALNEFAYAA
# DIVGLKWELTNSKYGMTYSRSLKNYKAEQPYQHAVYYLAVLLSEQIWMKDELLNALSXAIETARLIESKLSNAIPHIIPLLSRQLILHREIKLEDERY
# CMSQKIEKPILSGQRIKTRKRDEKEKYDPMGFRDAILLGLEKAGNDLDAISKYLDAAGSKLDYRRYGEDLFDILIAGGLLVPGGSIAQDGDKPVKTTA
# CVFEQPEDMESMRNFEQVFIKLMRRYKYLEKMFEEEMKKVLVFMKGFTPKERIKLARMTALWISNGSVPPTVLSVLINEHLVKDNLALDFLLEVFVTW
# RQEKGLSSLMTALKKGNIEGRLMEFVPPNKRTEEYFRSVFEAVGLADIVKLHKAQASQEAKRDLQQLLLDDLADNRPLKDIILDLKEMAQKSGIPEHE
# VIGLIWLVVMGQAEWNKKEELVADQALKHLKVYTPLFDAFTTTARSEHALILKVQEFCYENMNFMKVFQKIVLLFYKTDVISEEVILKWYKEGHSVKG
# KMMFLDQMKKFVEWLQNAEEESESGEEED]
# end gene Chr12:538789..638788.g1
###
# start gene Chr12:538789..638788.g2
Chr12:538789..638788	AUGUSTUS	gene	11963	12931	0.5	+	.	ID=Chr12:538789..638788.g2
Chr12:538789..638788	AUGUSTUS	mRNA	11963	12931	0.5	+	.	ID=Chr12:538789..638788.g2.t1;Parent=Chr12:538789..638788.g2
Chr12:538789..638788	AUGUSTUS	start_codon	11963	11965	.	+	0	Parent=Chr12:538789..638788.g2.t1
Chr12:538789..638788	AUGUSTUS	CDS	11963	12931	0.5	+	0	ID=Chr12:538789..638788.g2.t1.cds;Parent=Chr12:538789..638788.g2.t1
Chr12:538789..638788	AUGUSTUS	stop_codon	12929	12931	.	+	0	Parent=Chr12:538789..638788.g2.t1
# protein sequence = [MAQPITDVKELRKRQDMRKKMELLVMTTQADFCKALESLEDPNHRFKVDRWIRKEGGGGITCVLQDGVVFEKAGVNVS
# VVTGTLPPGAVQQMRARGKNMQEGSVPFFAAGVSAVIHPRNPMIPTIHFNYRYFEVENSDGSIQWWFGGGTDLTPYYLNEDDIKQFHKTLKIACDKHD
# LSFYPKYKKWCDDYFFITHRGERRGVGGIFFDDIDTPSQEEAFQFVKSCAEAVIPSYIPLVEKHKNDRYGYAERQWQLLRRGRYVEFNLIYDRGTKFG
# LYTPGARYESILMSLPLSAKWHYMHEPEPDSKEAELVNVLRNPKEWLK]
# end gene Chr12:538789..638788.g2
###
# start gene Chr12:538789..638788.g3
Chr12:538789..638788	AUGUSTUS	gene	15776	25088	0.02	-	.	ID=Chr12:538789..638788.g3
Chr12:538789..638788	AUGUSTUS	mRNA	15776	25088	0.02	-	.	ID=Chr12:538789..638788.g3.t1;Parent=Chr12:538789..638788.g3
Chr12:538789..638788	AUGUSTUS	stop_codon	15776	15778	.	-	0	Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	15776	15840	0.73	-	2	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	15908	16221	0.9	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	16290	16394	0.59	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	16654	16900	0.9	-	2	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	17874	18010	0.76	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	18099	18428	0.98	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	18925	18996	0.88	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	19096	19167	0.96	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	19244	19387	0.8	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	19465	19672	0.5	-	2	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	22730	22845	0.53	-	1	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	22918	23176	1	-	2	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	23266	23608	0.99	-	0	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	CDS	23682	25088	0.63	-	0	ID=Chr12:538789..638788.g3.t1.cds;Parent=Chr12:538789..638788.g3.t1
Chr12:538789..638788	AUGUSTUS	start_codon	25086	25088	.	-	0	Parent=Chr12:538789..638788.g3.t1
# protein sequence = [MKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPI
# GRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATL
# RKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQE
# KEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAI
# LCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL
# DSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTI
# GHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME
# GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICKNLSFLKMRAILLFLILIQTRGKSIQICPKYCTCKPGAQAEWLRIKCNNELQNIR
# DINIDSVSVELVQLDLSKNNIYAIEANIFKNLTNLKRLNLSRNDITFIGEDCFNGLENLERLDLSKNQISTIDTYTFKTLSNLKRLDLSSNNISMMKP
# SLFHDLLALERFPAPKCASPLNVKGEFVKELKYSENIQCQWLPPTIELRPIHNQVVFAGDSITLKCRAPSITEDKNAKLSWLWYPNTTSEIIDLNSFL
# DPQKSLSNIKIDNRYLTDSGIVDSSLSIVPVKEEHNGQWNCLLVSTNGNRSKTISVIVISEETRYCPLIDGMSVQNLTEPVYIMLKVPLYYYAGKKLL
# PVVWDETLNKSGGWTSDGCHLRNVLNNLIVFHCNRLGYYGLLQDTSSFDYDDNSIGIYQTENIPICQGVGLILHYLSLCPLLWMAVFASNMYKKLSKS
# DLEDIPDNELQDQPLPKPLLGLYLVGWGIAMIICGISGAINLREYAGYSYCFLTSGPALVALFVPVGILIMYLVIFHLLIKCSIQNVDMNAQLSEEIV
# HVVHKLFYLILKIQNILK]
# end gene Chr12:538789..638788.g3
###
# start gene Chr12:538789..638788.g4
Chr12:538789..638788	AUGUSTUS	gene	25256	33246	0.03	-	.	ID=Chr12:538789..638788.g4
Chr12:538789..638788	AUGUSTUS	mRNA	25256	33246	0.03	-	.	ID=Chr12:538789..638788.g4.t1;Parent=Chr12:538789..638788.g4
Chr12:538789..638788	AUGUSTUS	stop_codon	25256	25258	.	-	0	Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	25256	26310	0.49	-	2	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	28647	28802	0.55	-	2	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	28874	28998	0.99	-	1	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	29145	29419	0.99	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	29493	29627	0.92	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	29746	29832	0.51	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	30299	30376	0.57	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	30437	30611	0.89	-	1	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	30711	30961	0.57	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	31059	31149	0.45	-	1	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	31252	31491	0.49	-	1	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	31759	31906	0.61	-	2	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	32010	32275	0.97	-	1	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	32432	32711	0.98	-	2	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	32802	33015	0.82	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	CDS	33073	33246	0.93	-	0	ID=Chr12:538789..638788.g4.t1.cds;Parent=Chr12:538789..638788.g4.t1
Chr12:538789..638788	AUGUSTUS	start_codon	33244	33246	.	-	0	Parent=Chr12:538789..638788.g4.t1
# protein sequence = [MCSIINLTELIGPLVIPGNETGSTEISGISLTGEMGLWGKGLIFEDAYSDRTICASITVLENNVEKFAEVRFYDTIAG
# SIWFRWLGDNDISDTIIYIDLYHVNNKKLRGTNYTEHYWKIYVTDILDISKDKSSCNILQTIFDPDNAGNGQAIGDIDIRLGKIKVAVDHHNRYKSLE
# KDSKLSLLPIDLLEPYRQLYLVIFHPKHKNSFLTCSKINYRKPIFAKTLINSHGIKGEISLTQITPFYPTWINVSLTPINDLKTRLRYATKIKSYSIH
# ELPPDPIKISSTTAELCNTTKQIYNPNNIDMMTIPPAGFGTQDQYAIGDLSGKLQGRKEGFYHYDILPGSAKLNGIYWDTYLPLSGMYNETDNQSIMP
# WICGTINLYLPDNTGEMPIVTAQVIYRYPIVGKIIFRQPKNEPQMDTTIIIENLIHADGNTLNNSRHHRWMIHDNPPGKDYYSWMDRCLSTGEPYNPY
# KVEWNSDHTEYCSMLETSLCRVGNLIRHNTIDIAGKKLYGTLISRKLFTDTMLALSGPNNILGKSLVIYDDNGPRARGERLACSIISETYRRKAVVKD
# WFGNGEIILLKGKLQFIQQNEYDVTNLEVNLDGLDEKMNGYHVHMTPIEQDLEFPCESTSLYGHWNPLNVNTQLIHQDGSQSETIIEVNLRHPGKYDR
# NITKDHNWAIYVNPVGVDAAVKIKDTRCVAGGYVWNPYFTQLADPLNDDLYKQECGPDLPLRCYVGDISGRLGPINIGLKRQVFTDSNFPLAGAVSAM
# GRSIVVFDENFGSNKFACANIEPDNDIVKYVNIRKPPRFVAAQFLEDVRKIMGIPHWMLSIDNRKTKVLYNGACIQFLLHFKGPIAYNLEQDFNKLIS
# IGRLDVPSLYIPGYVPKKRNGTLNYRQCGNRDPSDKNQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQ
# AEAQHTSGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGL
# SDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIK
# QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGYKGFL]
# end gene Chr12:538789..638788.g4
###
# start gene Chr12:538789..638788.g5
Chr12:538789..638788	AUGUSTUS	gene	36741	39936	0.89	+	.	ID=Chr12:538789..638788.g5
Chr12:538789..638788	AUGUSTUS	mRNA	36741	39936	0.89	+	.	ID=Chr12:538789..638788.g5.t1;Parent=Chr12:538789..638788.g5
Chr12:538789..638788	AUGUSTUS	start_codon	36741	36743	.	+	0	Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	CDS	36741	36743	0.9	+	0	ID=Chr12:538789..638788.g5.t1.cds;Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	CDS	38207	38434	1	+	0	ID=Chr12:538789..638788.g5.t1.cds;Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	CDS	38801	38984	1	+	0	ID=Chr12:538789..638788.g5.t1.cds;Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	CDS	39109	39181	1	+	2	ID=Chr12:538789..638788.g5.t1.cds;Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	CDS	39783	39936	1	+	1	ID=Chr12:538789..638788.g5.t1.cds;Parent=Chr12:538789..638788.g5.t1
Chr12:538789..638788	AUGUSTUS	stop_codon	39934	39936	.	+	0	Parent=Chr12:538789..638788.g5.t1
# protein sequence = [MADKEKKKKTKKKEEAAPAPPPPEPEPEPEKPPTPAPSTPKESGSTRASSRGSRKAKRAGSSVFSMFTQKQVAEFKEA
# FQLMDQDKDGIIGKNDLRATFDNVGRLVTDKELDDMLNEAPAPINFTQLLNLFASRMSGSGQDDDETVIAAFSTFDVNGKIDGERLRHALMTYGDKFT
# AKEVNDAYDNMYIDDKGFIDTQSLIAMLTGQEDEDEE]
# end gene Chr12:538789..638788.g5
###
# start gene Chr12:538789..638788.g6
Chr12:538789..638788	AUGUSTUS	gene	51649	55536	0.41	-	.	ID=Chr12:538789..638788.g6
Chr12:538789..638788	AUGUSTUS	mRNA	51649	55536	0.41	-	.	ID=Chr12:538789..638788.g6.t1;Parent=Chr12:538789..638788.g6
Chr12:538789..638788	AUGUSTUS	stop_codon	51649	51651	.	-	0	Parent=Chr12:538789..638788.g6.t1
Chr12:538789..638788	AUGUSTUS	CDS	51649	51891	0.53	-	0	ID=Chr12:538789..638788.g6.t1.cds;Parent=Chr12:538789..638788.g6.t1
Chr12:538789..638788	AUGUSTUS	CDS	55417	55536	0.83	-	0	ID=Chr12:538789..638788.g6.t1.cds;Parent=Chr12:538789..638788.g6.t1
Chr12:538789..638788	AUGUSTUS	start_codon	55534	55536	.	-	0	Parent=Chr12:538789..638788.g6.t1
# protein sequence = [MDDQYQQRMRNIMVAYNVIAIFFALWIQTMDMYHSWGNIRADGDVKTRLIFSFHILGFLCQLLMFSYSCDCIIRWTLT
# IAIDDLKQKDDTKRFDPGNHEVQCALLPNWKRILYRVPRNVL]
# end gene Chr12:538789..638788.g6
###
# start gene Chr12:538789..638788.g7
Chr12:538789..638788	AUGUSTUS	gene	60272	70877	0.11	-	.	ID=Chr12:538789..638788.g7
Chr12:538789..638788	AUGUSTUS	mRNA	60272	70877	0.11	-	.	ID=Chr12:538789..638788.g7.t1;Parent=Chr12:538789..638788.g7
Chr12:538789..638788	AUGUSTUS	stop_codon	60272	60274	.	-	0	Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	60272	60340	0.85	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	60426	60701	0.79	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	64117	64392	1	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	64966	65069	1	-	2	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	65202	65457	1	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	67309	67584	0.43	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	CDS	70683	70877	0.56	-	0	ID=Chr12:538789..638788.g7.t1.cds;Parent=Chr12:538789..638788.g7.t1
Chr12:538789..638788	AUGUSTUS	start_codon	70875	70877	.	-	0	Parent=Chr12:538789..638788.g7.t1
# protein sequence = [MNGRNVRNLSITVTAFYMKVAGFWVANNYAEKRRRNVAMFVTIFFAFMGISIEGRDLYFAWGDFEEDTSRAKRVIFTF
# HLMGCMCQLLMFTYSCDCLMHDSMSVANAAYNSLWPCLPMDKYGKSLRKDLTFVIMRSRSPCCLTACGFFPVSLETYTGDILYVVTNALSMMMITVKV
# CVIVVHKEEFINLIVYMQENFWNDNYHDLREREILENCKRTCAFFVSLVTAIGICAILSYLATPLIVQTASNNSERMLPFNMWLKLPLSESPYYELMF
# VYQANAPSTRRSIFIFLLIGAMSLLFMFTFSCNCVTEHSENIAIGAYSALWTAMPMDKFGKMLRNDLIMVIKRSRRVCCLTANGFFPVSLETYTTANA
# PSARRSIFIFLLIGAMSLLFMFTYSCDGVIEQSDNVAVGAYSALWTIMPMDKFGRMLRNDLIMVIERSRRVCCLTANGFFPVSLETYTTILSTAVSYF
# TLLRNNMENDKDD]
# end gene Chr12:538789..638788.g7
###
# start gene Chr12:538789..638788.g8
Chr12:538789..638788	AUGUSTUS	gene	72192	76161	0.33	-	.	ID=Chr12:538789..638788.g8
Chr12:538789..638788	AUGUSTUS	mRNA	72192	76161	0.33	-	.	ID=Chr12:538789..638788.g8.t1;Parent=Chr12:538789..638788.g8
Chr12:538789..638788	AUGUSTUS	stop_codon	72192	72194	.	-	0	Parent=Chr12:538789..638788.g8.t1
Chr12:538789..638788	AUGUSTUS	CDS	72192	72472	0.5	-	2	ID=Chr12:538789..638788.g8.t1.cds;Parent=Chr12:538789..638788.g8.t1
Chr12:538789..638788	AUGUSTUS	CDS	74806	75058	0.65	-	0	ID=Chr12:538789..638788.g8.t1.cds;Parent=Chr12:538789..638788.g8.t1
Chr12:538789..638788	AUGUSTUS	CDS	75922	76161	0.63	-	0	ID=Chr12:538789..638788.g8.t1.cds;Parent=Chr12:538789..638788.g8.t1
Chr12:538789..638788	AUGUSTUS	start_codon	76159	76161	.	-	0	Parent=Chr12:538789..638788.g8.t1
# protein sequence = [MGAKAVAKVVAHSKLVARHSNKDFALSMTAFLMKIVGLWLAKNEQEQRKRRLTLMYTVIAILFGVWVQFRDFYYSWPN
# FGNCAYTACNILCLIMVLLKLFVLFVHRKEFIDLLVYTHENFWHTNYTNNELLLLQNCKRISMLCITLINVCAQGTIVSYVLTPIVGKFPTNETSHIR
# VSHNGQPVPIVAVHVQLRFSDTRKHERRERCVLWPLDMPANEQDRQNTEKRSENGYNKIEETLLFDRQQILPRLPGNLYNG]
# end gene Chr12:538789..638788.g8
###
# start gene Chr12:538789..638788.g9
Chr12:538789..638788	AUGUSTUS	gene	77091	77423	0.7	+	.	ID=Chr12:538789..638788.g9
Chr12:538789..638788	AUGUSTUS	mRNA	77091	77423	0.7	+	.	ID=Chr12:538789..638788.g9.t1;Parent=Chr12:538789..638788.g9
Chr12:538789..638788	AUGUSTUS	start_codon	77091	77093	.	+	0	Parent=Chr12:538789..638788.g9.t1
Chr12:538789..638788	AUGUSTUS	CDS	77091	77423	0.7	+	0	ID=Chr12:538789..638788.g9.t1.cds;Parent=Chr12:538789..638788.g9.t1
Chr12:538789..638788	AUGUSTUS	stop_codon	77421	77423	.	+	0	Parent=Chr12:538789..638788.g9.t1
# protein sequence = [MRTAVDVSKDTGKKPPADRWQGRMDFIIITFTSSRSIRPASSIGSTVHHPEYVASPIFELSSINPPQIYVKKIIWMKL
# PTMWKKKMRRIETGTFACVHKNYHSTLRIHVY]
# end gene Chr12:538789..638788.g9
###
# start gene Chr12:538789..638788.g10
Chr12:538789..638788	AUGUSTUS	gene	79524	95991	0.08	-	.	ID=Chr12:538789..638788.g10
Chr12:538789..638788	AUGUSTUS	mRNA	79524	95991	0.08	-	.	ID=Chr12:538789..638788.g10.t1;Parent=Chr12:538789..638788.g10
Chr12:538789..638788	AUGUSTUS	stop_codon	79524	79526	.	-	0	Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	79524	79841	0.54	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	79991	80140	0.4	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	80979	81171	0.36	-	1	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	85224	85291	0.49	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	88281	88384	0.93	-	2	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	88448	88700	1	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	94724	94999	0.67	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	CDS	95767	95991	0.49	-	0	ID=Chr12:538789..638788.g10.t1.cds;Parent=Chr12:538789..638788.g10.t1
Chr12:538789..638788	AUGUSTUS	start_codon	95989	95991	.	-	0	Parent=Chr12:538789..638788.g10.t1
# protein sequence = [MTLCDTEPETREKDSRSTFAKQVYKFYEQFKKCVRYHQALIDYYQNLENVYTIITLGQVLVFSVLICLFGYQVFVAAA
# STARRFIFVFLLSGSMFLLFMFTYSCNDVMEHSDNVAIGAYSALWTILPMDKFGRMLRNDLIMVIKRSRRVCYLTANGFFPVSLETYTKDSVYISCNN
# LYLMIVVLKVGVLYAHKMEFFDLVTFTRNNFWRSYPDPEEELILAECKRICTIFVVVISFCAQGTCTGYMITPIIANVGRNESDRELPFNLWVDLPVG
# LSPYFEILFTVQVLSTAMSYFTLLKHSSLKMENTTCDCLIRDSTNIANATYNSLWSFMPMDKYGKMLRKDLILVIMRSKSPCYLTALGFFPVSLETYI
# SFLLKLTGVWMTVNDGEKRRRRIAMAYTFVIQVYGLYLNIGDIYHSWDDLSHCIFLTCNTLCIVLTMFKFSILFIRRTEFKNLILFARKNFWHLDYDR
# HETILFTKCRKFCTLWTLTVFSFTQASLTFYIITPICGEYEFTKYLTFYPNDTDLQDW]
# end gene Chr12:538789..638788.g10
###
# command line:
# augustus --species=nasonia --gff3=on --uniqueGeneId=true amel-subseq.fa
