ParsEval: Locus at Group7.16[54607, 73036]

# Locus at Group7.16[54607, 73036]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene3 | gene2

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	54738	72910	1	+	.	ID=mRNA3
    Group7.16	OGS	start_codon	54738	54740	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	54738	54767	.	+	0	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	54738	54767	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	54768	54872	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	54873	55007	.	+	0	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	54873	55007	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	55008	58320	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	58321	58528	.	+	0	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	58321	58528	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	58529	61485	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	61486	61964	.	+	2	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	61486	61964	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	61965	70078	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	70079	70256	.	+	0	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	70079	70256	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	70257	70375	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	70376	70597	.	+	2	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	70376	70597	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	70598	70756	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	70757	70986	.	+	2	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	70757	70986	.	+	.	Parent=mRNA3
    Group7.16	OGS	intron	70987	72748	.	+	.	Parent=mRNA3
    Group7.16	OGS	CDS	72749	72910	.	+	0	ID=CDS3;Parent=mRNA3
    Group7.16	OGS	exon	72749	72910	.	+	.	Parent=mRNA3
    Group7.16	OGS	stop_codon	72908	72910	.	+	.	Parent=mRNA3
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	54607	73036	.	+	.	ID=mRNA2;Name=XM_001122105.3;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	five_prime_UTR	54607	54608	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	54607	54767	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	start_codon	54609	54611	.	+	.	Parent=mRNA2
    Group7.16	NCBI	CDS	54609	54767	.	+	0	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	54768	54872	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	54873	55007	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	54873	55007	.	+	0	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	55008	58320	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	58321	58528	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	58321	58528	.	+	0	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	58529	61485	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	61486	61964	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	61486	61964	.	+	2	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	61965	70078	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	70079	70256	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	70079	70256	.	+	0	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	70257	70375	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	70376	70597	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	70376	70597	.	+	2	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	70598	70756	.	+	.	Parent=mRNA2
    Group7.16	NCBI	exon	70757	70986	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	CDS	70757	70986	.	+	2	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	intron	70987	72748	.	+	.	Parent=mRNA2
    Group7.16	NCBI	CDS	72749	72910	.	+	0	ID=CDS2;Parent=mRNA2;Name=XP_001122105.3;Dbxref=GeneID:726362,Genbank:XP_001122105.3,BEEBASE:GB46289;gbkey=CDS;gene=LOC726362;product=luciferin 4-monooxygenase;protein_id=XP_001122105.3
    Group7.16	NCBI	exon	72749	73036	.	+	.	Parent=mRNA2;Dbxref=GeneID:726362,Genbank:XM_001122105.3,BEEBASE:GB46289;gbkey=mRNA;gene=LOC726362;product=luciferin 4-monooxygenase-like;transcript_id=XM_001122105.3
    Group7.16	NCBI	stop_codon	72908	72910	.	+	.	Parent=mRNA2
    Group7.16	NCBI	three_prime_UTR	72911	73036	.	+	.	Parent=mRNA2
    ###

### CDS structure comparison

reference CDS segments | 8
match prediction | 7
don't match prediction | 1
prediction CDS segments | 8
match reference | 7
don't match reference | 1
Sensitivity | 0.875
Specificity | 0.875
F1 score | 0.875
Annotation edit distance | 0.125

### Exon structure comparison

reference exons | 8
match prediction | 6
don't match prediction | 2
prediction exons | 8
match reference | 6
don't match reference | 2
Sensitivity | 0.750
Specificity | 0.750
F1 score | 0.750
Annotation edit distance | 0.250

### UTR structure comparison

reference UTR segments | 0
match prediction | 0
don't match prediction | 0
prediction UTR segments | 2
match reference | 0
don't match reference | 2
Sensitivity | --
Specificity | 0.000
F1 score | --
Annotation edit distance | --

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 0.993 | 0.993 | 0.986
correlation coefficient | 0.959 | -- | --
sensitivity | 1.000 | -- | --
specificity | 0.927 | 0.000 | --
F1 Score | 0.962 | -- | --
Annotation edit distance | 0.036 | -- | --