ParsEval: Locus at Group7.16[110654, 116915]

# Locus at Group7.16[110654, 116915]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene7 | gene6

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	110657	116915	1	+	.	ID=mRNA7
    Group7.16	OGS	five_prime_UTR	110657	110831	1	+	.	Parent=mRNA7
    Group7.16	OGS	exon	110657	110891	1	+	.	Parent=mRNA7
    Group7.16	OGS	start_codon	110832	110834	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	110832	110891	.	+	0	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	intron	110892	111894	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	111895	112028	.	+	0	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	exon	111895	112028	1	+	.	Parent=mRNA7
    Group7.16	OGS	intron	112029	114290	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	114291	114550	.	+	1	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	exon	114291	114550	1	+	.	Parent=mRNA7
    Group7.16	OGS	intron	114551	114742	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	114743	114848	.	+	2	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	exon	114743	114848	1	+	.	Parent=mRNA7
    Group7.16	OGS	intron	114849	114936	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	114937	115088	.	+	1	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	exon	114937	115088	1	+	.	Parent=mRNA7
    Group7.16	OGS	intron	115089	116328	.	+	.	Parent=mRNA7
    Group7.16	OGS	CDS	116329	116435	.	+	2	ID=CDS7;Parent=mRNA7
    Group7.16	OGS	exon	116329	116915	1	+	.	Parent=mRNA7
    Group7.16	OGS	stop_codon	116433	116435	.	+	.	Parent=mRNA7
    Group7.16	OGS	three_prime_UTR	116436	116915	1	+	.	Parent=mRNA7
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	110654	116906	.	+	.	ID=mRNA7;Name=XM_393191.5;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	five_prime_UTR	110654	110831	.	+	.	Parent=mRNA7
    Group7.16	NCBI	exon	110654	110891	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	start_codon	110832	110834	.	+	.	Parent=mRNA7
    Group7.16	NCBI	CDS	110832	110891	.	+	0	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	intron	110892	111894	.	+	.	Parent=mRNA7
    Group7.16	NCBI	exon	111895	112028	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	CDS	111895	112028	.	+	0	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	intron	112029	114290	.	+	.	Parent=mRNA7
    Group7.16	NCBI	exon	114291	114550	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	CDS	114291	114550	.	+	1	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	intron	114551	114742	.	+	.	Parent=mRNA7
    Group7.16	NCBI	exon	114743	114848	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	CDS	114743	114848	.	+	2	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	intron	114849	114936	.	+	.	Parent=mRNA7
    Group7.16	NCBI	exon	114937	115088	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	CDS	114937	115088	.	+	1	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	intron	115089	116328	.	+	.	Parent=mRNA7
    Group7.16	NCBI	CDS	116329	116435	.	+	2	ID=CDS7;Parent=mRNA7;Name=XP_393191.2;Dbxref=GeneID:409693,Genbank:XP_393191.2,BEEBASE:GB46291;gbkey=CDS;gene=LOC409693;product=inositol monophosphatase 1-like;protein_id=XP_393191.2
    Group7.16	NCBI	exon	116329	116906	.	+	.	Parent=mRNA7;Dbxref=GeneID:409693,Genbank:XM_393191.5,BEEBASE:GB46291;gbkey=mRNA;gene=LOC409693;product=inositol-1-%28or 4-%29monophosphatase;transcript_id=XM_393191.5
    Group7.16	NCBI	stop_codon	116433	116435	.	+	.	Parent=mRNA7
    Group7.16	NCBI	three_prime_UTR	116436	116906	.	+	.	Parent=mRNA7
    ###

### CDS structure comparison

reference CDS segments | 6
prediction CDS segments | 6
CDS segments structures match perfectly!

### Exon structure comparison

reference exons | 6
match prediction | 4
don't match prediction | 2
prediction exons | 6
match reference | 4
don't match reference | 2
Sensitivity | 0.667
Specificity | 0.667
F1 score | 0.667
Annotation edit distance | 0.333

### UTR structure comparison

reference UTR segments | 2
match prediction | 0
don't match prediction | 2
prediction UTR segments | 2
match reference | 0
don't match reference | 2
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 1.000 | 0.998 | 0.998
correlation coefficient | 1.000 | 0.990 | --
sensitivity | 1.000 | 0.986 | --
specificity | 1.000 | 0.995 | --
F1 Score | 1.000 | 0.991 | --
Annotation edit distance | 0.000 | 0.009 | --