ParsEval: Locus at Group7.16[613, 12837]

# Locus at Group7.16[613, 12837]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene1 | gene1

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	613	12833	1	+	.	ID=mRNA1
    Group7.16	OGS	start_codon	613	615	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	613	740	.	+	0	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	613	740	1	+	.	Parent=mRNA1
    Group7.16	OGS	intron	741	963	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	964	1048	.	+	1	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	964	1048	1	+	.	Parent=mRNA1
    Group7.16	OGS	intron	1049	1968	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	1969	2241	.	+	0	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	1969	2241	1	+	.	Parent=mRNA1
    Group7.16	OGS	intron	2242	7743	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	7744	7922	.	+	0	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	7744	7922	1	+	.	Parent=mRNA1
    Group7.16	OGS	intron	7923	9593	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	9594	9766	.	+	1	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	9594	9766	1	+	.	Parent=mRNA1
    Group7.16	OGS	intron	9767	12449	.	+	.	Parent=mRNA1
    Group7.16	OGS	CDS	12450	12691	.	+	2	ID=CDS1;Parent=mRNA1
    Group7.16	OGS	exon	12450	12833	1	+	.	Parent=mRNA1
    Group7.16	OGS	stop_codon	12689	12691	.	+	.	Parent=mRNA1
    Group7.16	OGS	three_prime_UTR	12692	12833	1	+	.	Parent=mRNA1
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	613	12837	.	+	.	ID=mRNA1;Name=XM_006562493.1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	start_codon	613	615	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	613	740	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	613	740	.	+	0	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	741	963	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	964	1048	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	964	1048	.	+	1	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	1049	1968	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	1969	2241	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	1969	2241	.	+	0	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	2242	7743	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	7744	7922	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	7744	7922	.	+	0	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	7923	9275	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	9276	9308	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	9276	9308	.	+	1	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	9309	9593	.	+	.	Parent=mRNA1
    Group7.16	NCBI	exon	9594	9766	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	CDS	9594	9766	.	+	1	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	intron	9767	12449	.	+	.	Parent=mRNA1
    Group7.16	NCBI	CDS	12450	12691	.	+	2	ID=CDS1;Parent=mRNA1;Name=XP_006562556.1;Dbxref=GeneID:726786,Genbank:XP_006562556.1,BEEBASE:GB46287;gbkey=CDS;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;protein_id=XP_006562556.1
    Group7.16	NCBI	exon	12450	12837	.	+	.	Parent=mRNA1;Dbxref=GeneID:726786,Genbank:XM_006562493.1,BEEBASE:GB46287;gbkey=mRNA;gene=LOC726786;product=proton-coupled amino acid transporter 1-like;transcript_id=XM_006562493.1
    Group7.16	NCBI	stop_codon	12689	12691	.	+	.	Parent=mRNA1
    Group7.16	NCBI	three_prime_UTR	12692	12837	.	+	.	Parent=mRNA1
    ###

### CDS structure comparison

reference CDS segments | 6
match prediction | 6
don't match prediction | 0
prediction CDS segments | 7
match reference | 6
don't match reference | 1
Sensitivity | 1.000
Specificity | 0.857
F1 score | 0.923
Annotation edit distance | 0.071

### Exon structure comparison

reference exons | 6
match prediction | 5
don't match prediction | 1
prediction exons | 7
match reference | 5
don't match reference | 2
Sensitivity | 0.833
Specificity | 0.714
F1 score | 0.769
Annotation edit distance | 0.226

### UTR structure comparison

reference UTR segments | 1
match prediction | 0
don't match prediction | 1
prediction UTR segments | 1
match reference | 0
don't match reference | 1
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 0.997 | 1.000 | 0.997
correlation coefficient | 0.984 | 0.986 | --
sensitivity | 1.000 | 1.000 | --
specificity | 0.970 | 0.973 | --
F1 Score | 0.985 | 0.986 | --
Annotation edit distance | 0.015 | 0.014 | --